e12a5d05-cc95-407f-b0f7-c86e79cc5b3a Camille PELLETIER IFREMER Station de La Tremblade - Avenue de Mus de Loup - Ronce les Bains La Tremblade France camille.pelletier@ifremer.fr pointOfContact 2025-12-13T11:49:47.831909Z ISO 19115-3 - SEXTANT 1.0 WGS 84 (EPSG:4326) EPSG 8.6 DNA sequencing of Crassostrea gigas Pacific oyster spat infected in the wild with OsHV-1 virus 2021-12-17 creation 2022-01-27 publication https://sextant.ifremer.fr/record/e12a5d05-cc95-407f-b0f7-c86e79cc5b3a FR-330-715-368-00032-IFR_BIOINFO_DNA_SEQ_CRASSOSTREA_OsHV-1 DNA sequencing of Crassostrea gigas Pacific oyster spat infected in the wild with OsHV-1 virus in 4 French oyster basins (Marennes Oleron Bay, Arcachon bay, Rade de Brest and Thau lagoon). IFREMER, Unité Adaptation Santé des Invertébrés Marins (ASIM) PELLETIER Camille IFREMER Station de La Tremblade - Avenue de Mus de Loup - Ronce les Bains - 17390 La Tremblade La Tremblade camille.pelletier@ifremer.fr author IFREMER +33 (0)2 98.22.49.16 +33 (0)2 98.22.46.44 IFREMER Centre de Bretagne ZI Pointe du diable CS 10070 PLOUZANE 29280 France sismer@ifremer.fr http://data.ifremer.fr/SISMER web site publisher https://sextant.ifremer.fr/geonetwork/srv/api/records/e12a5d05-cc95-407f-b0f7-c86e79cc5b3a/attachments/BioinfoMarine.png Habitats and biotopes GEMET - INSPIRE themes, version 1.0 2018-07-27T14:39:48 publication 2018-07-27 publication geonetwork.thesaurus.external.theme.httpinspireeceuropaeutheme-theme /Biological Environment/Bioinformatics Thèmes Sextant 2025-12-09 publication geonetwork.thesaurus.local.theme.sextant-theme Variables ODATIS 2023-10-13 publication geonetwork.thesaurus.local.theme.odatis_variables Use limitation 2025-12-09 publication geonetwork.thesaurus.local.theme.codelist_use_limitation Bioinformatics ODATIS aggregation parameters and Essential Variable names 2025-07-29 publication geonetwork.thesaurus.external.theme.NVS.OD1 Analysis data Type de jeux de donnée ODATIS 2025-12-09 publication geonetwork.thesaurus.local.theme.type_jeux_donnee CC-BY-NC (Creative Commons - Attribution, Pas d'utilisation commerciale) utf8 -4.9644 4.4419 42.4478 49.0363 2021-05-24 2022-08-31 Suivi des mortalités d'huitres pendant les épisodes de mortalité d'huitres, été 2021 /home/ref-bioinfo/ifremer/sg2m/gt-huitre-viral-diversity NETWORK:LINK https://doi.org/10.12770/e12a5d05-cc95-407f-b0f7-c86e79cc5b3a DOI Digital Object Identifier (DOI) C. gigas oysters were deposited in 4 oyster basins: La Floride (Marennes Oleron bay), Grahude (Arcachon bay), Rade de Brest and Thau lagoon. During mortality events caused by OsHV-1, the moribund oysters were sampled. A part of the moribund oysters was used to perform DNA extractions (Magattract kit). The extracted DNA was then sequenced using the NovaSeq 6000 technology on the Genome Quebec sequencing platform. (see metadata)