seanoe:84524 TRENKEL Verena Ifremer, UMR DECOD (Ecosystem Dynamics and Sustainability), Nantes, France 2023-10-25 ISO 19115:2003/19139 1.0 Data for CKMR abundance estimation for thornback ray (Raja clavata) in the central Bay of Biscay 2021 2023-10-25 Trenkel Verena, Charrier Gregory, Lorance Pascal (2021). Data for CKMR abundance estimation for thornback ray (Raja clavata) in the central Bay of Biscay. SEANOE. https://doi.org/10.17882/84524 Input data, TMB (C++) and R code for close-kin mark recapture (CKMR) abundance estimation for two subpopulations of thornback ray (Raja clavata) in the central Bay of Biscay (offshore and Gironde estuary, see figure). Samples were taken between 2015 to 2020. Parent-offspring pairs were identified using SNP genotype information. Birth years of individuals were estimated using length information and growth curves by sex. Funding: The creation of this SNP data set was funded by the French “Agence Nationale de la Recherche” (ANR) under the GenoPopTaille project (ANR-14-CE02-0006-01), by Fondation Total under the GenopPopTaille-Capsules project and by the European Union's Horizon 2020 research and innovation programme under the grant agreement No. 773713. TRENKEL Verena Ifremer, UMR DECOD (Ecosystem Dynamics and Sustainability), Nantes, France CHARRIER Gregory Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France LORANCE Pascal Ifremer, UMR DECOD (Ecosystem Dynamics and Sustainability), Nantes, France SEANOE https://www.seanoe.org/data/00733/84524/illustration.gif close-kin mark-recapture abundance estimation thornback ray Fisheries and aquaculture H2020 PANDORA (Agreement: 773713) Fish ODATIS aggregation parameters and Essential Variable names 2024-09-16 geonetwork.thesaurus.external.theme.NVS.OD1 Fisheries and aquaculture SeaDataNet Parameter Disciplines 2021-04-07 geonetwork.thesaurus.external.parameter.NVS.P08 Analysis data Type de jeux de donnée ODATIS 2024-10-15 geonetwork.thesaurus.local.theme.type_jeux_donnee CC-BY-NC-SA (Creative Commons - Attribution, No commercial usage, Sharing under the same conditions) Close-kin mark–recapture abundance estimation: practical insights and lessons learned 2022 Oxford University Press (OUP) TRENKEL VERENA CHARRIER GREGORY LORANCE PASCAL BRAVINGTON MARK V 10.1093/icesjms/fsac002 SNPs for thornback ray Raja clavata, validated from genotyped individuals 2019 SEANOE Le Cam Sabrina Bidault Adeline Charrier Gregory Cornette Florence Lamy Jean-Baptiste Lapegue Sylvie Lorance Pascal Marandel Florianne Trenkel Verena 10.17882/70546 oceans -5.0 -1.0 45.0 47.41 C++ CODE R CODE TEXTE R DATA OBJECT https://www.seanoe.org/data/00733/84524/data/89614.cpp WWW:DOWNLOAD-1.0-link--download TMB model code (version 2) - 8 KB https://www.seanoe.org/data/00733/84524/data/89615.r WWW:DOWNLOAD-1.0-link--download R code for running model - 2 KB https://www.seanoe.org/data/00733/84524/data/89616.txt WWW:DOWNLOAD-1.0-link--download Description of data fields - 2 KB https://www.seanoe.org/data/00733/84524/data/89617.rdata WWW:DOWNLOAD-1.0-link--download Processed data Data for Gironde thornback ray - 160 KB https://www.seanoe.org/data/00733/84524/data/89618.rdata WWW:DOWNLOAD-1.0-link--download Processed data Data for offshore thornback ray - 170 KB https://www.seanoe.org/data/00733/84524/ WWW:DOWNLOAD-1.0-link--download TMB model code (version 1) [RESTRICTED] - 8 KB https://doi.org/10.17882/84524 WWW:LINK-1.0-http--metadata-URL DOI of the product https://www.seanoe.org/data/00733/84524/ rel-canonical Seanoe