seanoe:86131 PETTON Sebastien Ifremer, Univ Brest, CNRS, IRD, LEMAR, F‐29280, Plouzané, France 2026-03-12 ISO 19115:2003/19139 1.0 ECOSCOPA network : high frequency environmental database 2026-03 2026-03-12 Petton Sebastien, Pouvreau Stephane, Fleury Elodie, Lagarde Franck (2026). ECOSCOPA network : high frequency environmental database. SEANOE. https://doi.org/10.17882/86131 Based on the consolidation of the Ifremer networks RESCO (https://doi.org/10.17882/53007) and VELYGER (https://doi.org/10.17882/41888), the general objective of the ECOSCOPA project is to analyze the causes of spatio-temporal variability of the main life traits (Larval stage - Recruitment - Reproduction - Growth – Survival – Cytogenetic anomalies) of the Pacific oyster in France and follow their evolution over the long term in the context of climate change. The high frequency environmental data are monitored since 2010 at several stations next to oyster farm areas in eight bays of the French coast (from south to north): Thau Lagoon and bays of Arcachon, Marennes Oléron, Bourgneuf, Vilaine, Brest, Mont Saint-Michel and Veys (see map below). Sea temperature and practical salinity are recorded at 15-mins frequency. For several sites, fluorescence and turbidity data are also available. Data are acquired with automatic probes directly put in oyster bags or fixed on metallic structure at 50 cm over the sediment bottom, except for Thau Lagoon whose probes are deployed at 2m below sea surface. Since 2010, several types of probes were used: STP2, STPS, SMATCH or WiSens CTD from NKE (www.nke-instrumentation.fr) and recently ECO FLNTU (www.seabird.com). The probes are regularly qualified by calibrations in the Ifremer coastal laboratories. Precision estimated of the complete data collection process is: temperature (±0.1°C), salinity (±0.5psu), in vivo fluorescence (±10%), turbidity (±10%). The data are qualified into several levels: 0-No Quality Check performed, 1-Good data, 2-Probably good data, 3-Probably bad data, 4-Bad data, 5-Value changed, 7-Nominal value, 8-Interpolated value, 9-Missing value.  PENOT Julia Julia.Penot@ifremer.fr CHEVE Julien Julien.Cheve@ifremer.fr LE GALL Patrik Patrik.Le.Gall@ifremer.fr LOUIS Wilfried Wilfried.Louis@ifremer.fr PALVADEAU Hubert Hubert.Palvadeau@ifremer.fr BOUGET Jean-Francois Jean.Francois.Bouget@ifremer.fr PIERRE DUPLESSIX Olivier Olivier.Pierre.Duplessix@ifremer.fr DEBORDE Jonathan Jonathan.Deborde@ifremer.fr GUEUX Aurore Aurore.Gueux@ifremer.fr RIGOUIN Loic Loic.Rigouin@ifremer.fr D'AMICO Florence Florence.D.Amico@ifremer.fr MESSIAEN Gregory Gregory.Messiaen@ifremer.fr LE GALL Erwan Erwan.Le.Gall@ifremer.fr MORTREUX Serge Serge.Mortreux@ifremer.fr QUEAU Isabelle Isabelle.Queau@ifremer.fr GRIZON James James.Grizon@ifremer.fr CHABIRAND Jean-Michel Jean.Michel.Chabirand@ifremer.fr SEUGNET Jean-Luc Jean.Luc.Seugnet@ifremer.fr AUBY Isabelle Isabelle.Auby@ifremer.fr COSTES Louis MALO Florent PETTON Sebastien Ifremer, Univ Brest, CNRS, IRD, LEMAR, F‐29280, Plouzané, France POUVREAU Stephane Ifremer, Univ Brest, CNRS, IRD, LEMAR, F‐29280, Plouzané, France FLEURY Elodie Ifremer, Univ Brest, CNRS, IRD, LEMAR, F‐29280, Plouzané, France LAGARDE Franck SEANOE https://www.seanoe.org/data/00749/86131/illustration.gif Bay of Brest High frequency coastal monitoring sea temperature practical salinity fluorescence turbidity Biological oceanography Physical oceanography Biological oceanography Physical oceanography SeaDataNet Parameter Disciplines 2025-07-29 geonetwork.thesaurus.external.parameter.NVS.P08 /Observational data/in-situ Type de jeux de donnée ODATIS 2025-12-09 geonetwork.thesaurus.local.theme.type_jeux_donnee CC-BY-NC-ND (Creative Commons - Attribution, No commercial usage, No modification) Unraveling multifactorial risks in Pacific oyster mortality: a four-year study of environmental and age-related impacts 2026 Inter-Research Science Center Fleury Elodie Mat Audrey Petton Sébastien Pernet Fabrice 10.3354/aei00512 Food availability, but not tidal emersion, influences the combined effects of ocean acidification and warming on oyster physiological performance 2025 Elsevier BV Caillon Coline Fleury Elodie Di Poi Broussard Carole Gazeau Frédéric Pernet Fabrice 10.1016/j.aquaculture.2025.742459 Observatoire national du cycle de vie de l’huître creuse en France - Rapport annuel ECOSCOPA 2024 2025 Ifremer Lagarde Franck Petton Sébastien Fleury Elodie Pouvreau Stephane 10.13155/107581 Rapport Final GT HUITRE 2024 Ifremer Gueguen Yannick Arzul Isabelle Goulletquer Philippe 10.13155/104304 Intertidal limits shape covariation between metabolic plasticity, oxidative stress and telomere dynamics in Pacific oyster (Crassostrea gigas) 2023 Elsevier BV Dupoué Andreaz Ferraz Mello Trevisan Danielle Trevisan Rafael Dubreuil Christine Queau Isabelle Petton Sébastien Huvet Arnaud Guével Blandine Com Emmanuelle Pernet Fabrice Salin Karine Fleury Elodie Corporeau Charlotte 10.1016/j.marenvres.2023.106149 Epigenetic variations are more substantial than genetic variations in rapid adaptation of oyster to Pacific oyster mortality syndrome 2023 American Association for the Advancement of Science (AAAS) GAWRA JANAN VALDIVIESO MUNOZ ALEJANDRO ROUX FABRICE LAPORTE MARTIN DE LORGERIL JULIEN GUEGUEN YANNICK SACCAS MATHILDE ESCOUBAS JEAN-MICHEL MONTAGNANI CAROLINE DESTOUMIEUX GARZON DELPHINE LAGARDE FRANCK LEROY MARC A. HAFFNER PHILIPPE PETTON BRUNO COSSEAU CÉLINE MORGA BENJAMIN DÉGREMONT LIONEL MITTA GUILLAUME GRUNAU CHRISTOPH VIDAL-DUPIOL JEREMIE 10.1126/sciadv.adh8990 A synthesis of SNAPO-CO2 ocean total alkalinity and total dissolved inorganic carbon measurements from 1993 to 2022 2023 Copernicus GmbH Metzl Nicolas Fin Jonathan Lo Monaco Claire Mignon Claude Alliouane Samir Antoine David Bourdin Guillaume Boutin Jacqueline Bozec Yann Conan Pascal Coppola Laurent Diaz Frédéric Douville Eric Durrieu de Madron Xavier Gattuso Jean-Pierre Gazeau Frédéric Golbol Melek Lansard Bruno Lefèvre Dominique Lefèvre Nathalie Lombard Fabien Louanchi Férial Merlivat Liliane Olivier Léa Petrenko Anne Petton Sébastien Pujo-Pay Mireille Rabouille Christophe Reverdin Gilles Ridame Céline Tribollet Aline Vellucci Vincenzo Wagener Thibaut Wimart-Rousseau Cathy 10.5194/essd-2023-308 Increased growth metabolism promotes viral infection in a susceptible oyster population 2023 Inter-Research Science Center Petton Bruno Alunno Bruscia Marianne Mitta Guillaume Pernet Fabrice 10.3354/aei00450 Using the two-way nesting technique AGRIF with MARS3D V11.2 to improve hydrodynamics and estimate environmental indicators 2023 Copernicus GmbH Petton Sébastien Garnier Valerie Caillaud Matthieu Debreu Laurent Dumas Franck 10.5194/gmd-16-1191-2023 Qualité du Milieu Marin Littoral. Bulletin de la surveillance 2021. Départements de Charente-Maritime et de Vendée (sud) 2022 Ifremer Le Fur Ines Bruneau Audrey Deborde Jonathan Guesdon Stephane Gueux Aurore Piraud Aude 10.13155/90555 Observatoire national du cycle de vie de l’huître creuse en France. Rapport annuel ECOSCOPA 2019 2020 Ifremer Fleury Elodie Petton Sebastien Corporeau Charlotte Benabdelmouna Abdellah Pouvreau Stephane 10.13155/79902 Genetic Characterization of Cupped Oyster Resources in Europe Using Informative Single Nucleotide Polymorphism (SNP) Panels 2020 MDPI Lapegue Sylvie Heurtebise Serge Cornette Florence Guichoux Erwan Gagnaire Pierre-Alexandre 10.3390/genes11040451 Observatoire national du cycle de vie de l’huître creuse en France. Rapport annuel ECOSCOPA 2018 2019 Ifremer Fleury Elodie Petton Sebastien Corporeau Charlotte Gangnery Aline Pouvreau Stephane 10.13155/74654 Dynamics of the Pacific Oyster Pathobiota during mortality episodes in Europe assessed by 16S rRNA gene profiling and a new target enrichment next‐generation sequencing strategy 2019 Wiley Lasa Aide Cesare Andrea Tassistro Giovanni Borello Alessio Gualdi Stefano Furones Dolors Carrasco Noelia Cheslett Deborah Brechon Amanda Paillard Christine Bidault Adeline Pernet Fabrice Canesi Laura Edomi Paolo Pallavicini Alberto Pruzzo Carla Vezzulli Luigi 10.1111/1462-2920.14750 Determination of risk factors for herpesvirus outbreak in oysters using a broad-scale spatial epidemiology framework 2018 Nature Publishing Group Pernet Fabrice Fuhrmann Marine Petton Bruno Mazurie Joseph Bouget Jean-Francois Fleury Elodie Daigle Gaetan Gernez Pierre 10.1038/s41598-018-29238-4 10.1007/s12237-025-01645-7 10.3354/meps14882 Marine environmental station database of Thau lagoon 2025 SEANOE Messiaen Gregory Mortreux Serge Le Gall Patrik Crottier Anais Lagarde Franck 10.17882/52404 VELYGER Database: The Oyster Larvae Monitoring French Project 2024 SEANOE Pouvreau Stephane Maurer Daniele Auby Isabelle Lagarde Franck Le Gall Patrik Cochet Hélène Bouquet Anne-Lise Geay Amélie Mille Dominique 10.17882/41888 ECOSCOPA network : National monitoring network of mortality and growth rates of the sentinel oyster Crassostrea gigas 2023 SEANOE Fleury Elodie Pouvreau Stephane Petton Sébastien 10.17882/53007 Marine environmental station database of Daoulas bay 2022 SEANOE Petton Sebastien Le Roy Valerian Bellec Gwenael Queau Isabelle Le Souchu Pierrick Pouvreau Stephane 10.17882/42493 oceans -4.324494 -4.321795 48.334031 48.335676 -2.004172 -1.993755 47.034395 47.042382 3.557415 3.569481 43.359246 43.367142 -1.108739 -1.100724 49.37011 49.376199 -1.846274 -1.812817 48.648235 48.665424 -2.634484 -2.624347 47.508026 47.514873 -1.18646 -1.174179 45.852782 45.863779 -1.138645 -1.131045 44.660641 44.666046 2020 2025 R SCRIPT CSV NC, NETCDF XLS, XLSX https://www.seanoe.org/data/00749/86131/#91375 WWW:DOWNLOAD-1.0-link--download R script to read the NetCDF format - 1 KB https://www.seanoe.org/data/00749/86131/#126888 WWW:DOWNLOAD-1.0-link--download Quality controlled data Daily mean data 2010-2025 - 1 MB https://www.seanoe.org/data/00749/86131/#126889 WWW:DOWNLOAD-1.0-link--download Quality controlled data 2010-2025 data - 40 MB https://www.seanoe.org/data/00749/86131/ WWW:DOWNLOAD-1.0-link--download Quality controlled data 2010-2024 data [RESTRICTED] - 43 MB https://www.seanoe.org/data/00749/86131/ WWW:DOWNLOAD-1.0-link--download Quality controlled data Daily mean data 2010-2024 [RESTRICTED] - 1 MB https://www.seanoe.org/data/00749/86131/ WWW:DOWNLOAD-1.0-link--download Quality controlled data 2010-2023 data [RESTRICTED] - 40 MB https://www.seanoe.org/data/00749/86131/ WWW:DOWNLOAD-1.0-link--download Quality controlled data Daily mean data 2010-2023 [RESTRICTED] - 858 KB https://www.seanoe.org/data/00749/86131/ WWW:DOWNLOAD-1.0-link--download Quality controlled data Daily mean data 2010-2022 [RESTRICTED] - 782 KB https://www.seanoe.org/data/00749/86131/ WWW:DOWNLOAD-1.0-link--download Quality controlled data 2010-2022 data [RESTRICTED] - 27 MB https://www.seanoe.org/data/00749/86131/ WWW:DOWNLOAD-1.0-link--download Quality controlled data 2010-2021 data [RESTRICTED] - 26 MB https://doi.org/10.17882/86131 WWW:LINK-1.0-http--metadata-URL DOI of the product https://www.seanoe.org/data/00749/86131/ rel-canonical Seanoe NKE (www.nke-instrumentation.fr) SMATCH with localized chlorination, frequency rotation: 4 months SP2T / STPS / WiSens CTD with rotation: fortnightly in productive period otherwise monthly. SeaBird (www.seabird.com) WetLab ECO FLNTU : Optical sensors which measure chlorophyll fluorescence at 470 nm and turbidity at 700 nm within the same volume. 5 measures at 1Hz every 15 mins. Fluorescence range 0-50 FFU with 0.01 FFU sensitivity / Turbidity range 0-100 NTU with 0.02 NTU sensitivity. No rotation needed, global maintenance at SeaBird facilites every two years.