• Catalogue PIGMA
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ECOSCOPA network : high frequency environmental database

Based on the consolidation of the Ifremer networks RESCO (https://doi.org/10.17882/53007) and VELYGER (https://doi.org/10.17882/41888), the general objective of the ECOSCOPA project is to analyze the causes of spatio-temporal variability of the main life traits (Larval stage - Recruitment - Reproduction - Growth – Survival – Cytogenetic anomalies) of the Pacific oyster in France and follow their evolution over the long term in the context of climate change.

The high frequency environmental data are monitored since 2010 at several stations next to oyster farm areas in eight bays of the French coast (from south to north): Thau Lagoon and bays of Arcachon, Marennes Oléron, Bourgneuf, Vilaine, Brest, Mont Saint-Michel and Veys (see map below). Sea temperature and practical salinity are recorded at 15-mins frequency. For several sites, fluorescence and turbidity data are also available.

Data are acquired with automatic probes directly put in oyster bags or fixed on metallic structure at 50 cm over the sediment bottom, except for Thau Lagoon whose probes are deployed at 2m below sea surface. Since 2010, several types of probes were used: STP2, STPS, SMATCH or WiSens CTD from NKE (www.nke-instrumentation.fr) and recently ECO FLNTU (www.seabird.com). The probes are regularly qualified by calibrations in the Ifremer coastal laboratories.

Precision estimated of the complete data collection process is: temperature (±0.1°C), salinity (±0.5psu), in vivo fluorescence (±10%), turbidity (±10%). The data are qualified into several levels: 0-No Quality Check performed, 1-Good data, 2-Probably good data, 3-Probably bad data, 4-Bad data, 5-Value changed, 7-Nominal value, 8-Interpolated value, 9-Missing value. 

Simple

Date (Publication)
2024-04
Date (Revision)
2024-06-27
Other citation details
Petton Sebastien, Pouvreau Stephane, Fleury Elodie, Lagarde Franck (2024). ECOSCOPA network : high frequency environmental database. SEANOE. https://doi.org/10.17882/86131
Custodian
  PENOT Julia
Custodian
  CHEVE Julien
Custodian
  LE GALL Patrik
Custodian
  LOUIS Wilfried
Custodian
  PALVADEAU Hubert
Custodian
  BOUGET Jean-Francois
Custodian
  PIERRE DUPLESSIX Olivier
Custodian
  DEBORDE Jonathan
Custodian
  GUEUX Aurore
Custodian
  RIGOUIN Loic
Custodian
  D'AMICO Florence
Custodian
  MESSIAEN Gregory
Custodian
  LE GALL Erwan
Custodian
  MORTREUX Serge
Custodian
  QUEAU Isabelle
Custodian
  GRIZON James
Custodian
  CHABIRAND Jean-Michel
Custodian
  SEUGNET Jean-Luc
Custodian
  AUBY Isabelle
Custodian
  COSTES Louis
Custodian
  MALO Florent
Author
  Ifremer, Univ Brest, CNRS, IRD, LEMAR, F‐29280, Plouzané, France - PETTON Sebastien
Author
  Ifremer, Univ Brest, CNRS, IRD, LEMAR, F‐29280, Plouzané, France - POUVREAU Stephane
Author
  Ifremer, Univ Brest, CNRS, IRD, LEMAR, F‐29280, Plouzané, France - FLEURY Elodie
Author
  LAGARDE Franck
Publisher
  SEANOE
Theme
  • High frequency
  • coastal monitoring
  • sea temperature
  • practical salinity
  • fluorescence
  • turbidity
  • Biological oceanography
  • Physical oceanography
ODATIS aggregation parameters and Essential Variable names
  • Fluorescence
  • Invertebrates
  • Salinity
  • Sea temperature
  • Turbidity
SeaDataNet Parameter Disciplines
  • Biological oceanography
  • Physical oceanography
Type de jeux de donnée ODATIS
  • /Observational data/in-situ
Use limitation
CC-BY-NC-ND (Creative Commons - Attribution, No commercial usage, No modification)
Use constraints
Other restrictions
Date (Publication)
2025
Publisher
  Elsevier BV
Author
  Caillon Coline
Author
  Fleury Elodie
Author
  Di Poi Broussard Carole
Author
  Gazeau Frédéric
Author
  Pernet Fabrice
Unique resource identifier
10.1016/j.aquaculture.2025.742459
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2024
Publisher
  Ifremer
Author
  Gueguen Yannick
Author
  Arzul Isabelle
Author
  Goulletquer Philippe
Unique resource identifier
10.13155/104304
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2023
Publisher
  Elsevier BV
Author
  Dupoué Andreaz
Author
  Ferraz Mello Trevisan Danielle
Author
  Trevisan Rafael
Author
  Dubreuil Christine
Author
  Queau Isabelle
Author
  Petton Sébastien
Author
  Huvet Arnaud
Author
  Guével Blandine
Author
  Com Emmanuelle
Author
  Pernet Fabrice
Author
  Salin Karine
Author
  Fleury Elodie
Author
  Corporeau Charlotte
Unique resource identifier
10.1016/j.marenvres.2023.106149
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2023
Publisher
  American Association for the Advancement of Science (AAAS)
Author
  GAWRA JANAN
Author
  VALDIVIESO MUNOZ ALEJANDRO
Author
  ROUX FABRICE
Author
  LAPORTE MARTIN
Author
  DE LORGERIL JULIEN
Author
  GUEGUEN YANNICK
Author
  SACCAS MATHILDE
Author
  ESCOUBAS JEAN-MICHEL
Author
  MONTAGNANI CAROLINE
Author
  DESTOUMIEUX GARZON DELPHINE
Author
  LAGARDE FRANCK
Author
  LEROY MARC A.
Author
  HAFFNER PHILIPPE
Author
  PETTON BRUNO
Author
  COSSEAU CÉLINE
Author
  MORGA BENJAMIN
Author
  DÉGREMONT LIONEL
Author
  MITTA GUILLAUME
Author
  GRUNAU CHRISTOPH
Author
  VIDAL-DUPIOL JEREMIE
Unique resource identifier
10.1126/sciadv.adh8990
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2023
Publisher
  Copernicus GmbH
Author
  Metzl Nicolas
Author
  Fin Jonathan
Author
  Lo Monaco Claire
Author
  Mignon Claude
Author
  Alliouane Samir
Author
  Antoine David
Author
  Bourdin Guillaume
Author
  Boutin Jacqueline
Author
  Bozec Yann
Author
  Conan Pascal
Author
  Coppola Laurent
Author
  Diaz Frédéric
Author
  Douville Eric
Author
  Durrieu de Madron Xavier
Author
  Gattuso Jean-Pierre
Author
  Gazeau Frédéric
Author
  Golbol Melek
Author
  Lansard Bruno
Author
  Lefèvre Dominique
Author
  Lefèvre Nathalie
Author
  Lombard Fabien
Author
  Louanchi Férial
Author
  Merlivat Liliane
Author
  Olivier Léa
Author
  Petrenko Anne
Author
  Petton Sébastien
Author
  Pujo-Pay Mireille
Author
  Rabouille Christophe
Author
  Reverdin Gilles
Author
  Ridame Céline
Author
  Tribollet Aline
Author
  Vellucci Vincenzo
Author
  Wagener Thibaut
Author
  Wimart-Rousseau Cathy
Unique resource identifier
10.5194/essd-2023-308
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2023
Publisher
  Inter-Research Science Center
Author
  Petton Bruno
Author
  Alunno Bruscia Marianne
Author
  Mitta Guillaume
Author
  Pernet Fabrice
Unique resource identifier
10.3354/aei00450
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2023
Publisher
  Copernicus GmbH
Author
  Petton Sébastien
Author
  Garnier Valerie
Author
  Caillaud Matthieu
Author
  Debreu Laurent
Author
  Dumas Franck
Unique resource identifier
10.5194/gmd-16-1191-2023
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2022
Publisher
  Ifremer
Author
  Le Fur Ines
Author
  Bruneau Audrey
Author
  Deborde Jonathan
Author
  Guesdon Stephane
Author
  Gueux Aurore
Author
  Piraud Aude
Unique resource identifier
10.13155/90555
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2020
Publisher
  Ifremer
Author
  Fleury Elodie
Author
  Petton Sebastien
Author
  Corporeau Charlotte
Author
  Benabdelmouna Abdellah
Author
  Pouvreau Stephane
Unique resource identifier
10.13155/79902
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2020
Publisher
  MDPI
Author
  Lapegue Sylvie
Author
  Heurtebise Serge
Author
  Cornette Florence
Author
  Guichoux Erwan
Author
  Gagnaire Pierre-Alexandre
Unique resource identifier
10.3390/genes11040451
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2019
Publisher
  Ifremer
Author
  Fleury Elodie
Author
  Petton Sebastien
Author
  Corporeau Charlotte
Author
  Gangnery Aline
Author
  Pouvreau Stephane
Unique resource identifier
10.13155/74654
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2019
Publisher
  Wiley
Author
  Lasa Aide
Author
  Cesare Andrea
Author
  Tassistro Giovanni
Author
  Borello Alessio
Author
  Gualdi Stefano
Author
  Furones Dolors
Author
  Carrasco Noelia
Author
  Cheslett Deborah
Author
  Brechon Amanda
Author
  Paillard Christine
Author
  Bidault Adeline
Author
  Pernet Fabrice
Author
  Canesi Laura
Author
  Edomi Paolo
Author
  Pallavicini Alberto
Author
  Pruzzo Carla
Author
  Vezzulli Luigi
Unique resource identifier
10.1111/1462-2920.14750
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2018
Publisher
  Nature Publishing Group
Author
  Pernet Fabrice
Author
  Fuhrmann Marine
Author
  Petton Bruno
Author
  Mazurie Joseph
Author
  Bouget Jean-Francois
Author
  Fleury Elodie
Author
  Daigle Gaetan
Author
  Gernez Pierre
Unique resource identifier
10.1038/s41598-018-29238-4
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2025
Publisher
  SEANOE
Author
  Messiaen
Author
  Gregory
Author
  Mortreux
Author
  Serge
Author
  Le Gall
Author
  Patrik
Author
  Crottier
Author
  Anais
Author
  Lagarde
Author
  Franck
Unique resource identifier
10.17882/52404
Association Type
Cross reference
Initiative Type
dataset
Date (Publication)
2024
Publisher
  SEANOE
Author
  Pouvreau
Author
  Stephane
Author
  Maurer
Author
  Daniele
Author
  Auby
Author
  Isabelle
Author
  Lagarde
Author
  Franck
Author
  Le Gall
Author
  Patrik
Author
  Cochet
Author
  Hélène
Author
  Bouquet
Author
  Anne-Lise
Author
  Geay
Author
  Amélie
Author
  Mille
Author
  Dominique
Unique resource identifier
10.17882/41888
Association Type
Cross reference
Initiative Type
dataset
Date (Publication)
2023
Publisher
  SEANOE
Author
  Fleury
Author
  Elodie
Author
  Pouvreau
Author
  Stephane
Author
  Petton
Author
  Sébastien
Unique resource identifier
10.17882/53007
Association Type
Cross reference
Initiative Type
dataset
Date (Publication)
2022
Publisher
  SEANOE
Author
  Petton
Author
  Sebastien
Author
  Le Roy
Author
  Valerian
Author
  Bellec
Author
  Gwenael
Author
  Queau
Author
  Isabelle
Author
  Le Souchu
Author
  Pierrick
Author
  Pouvreau
Author
  Stephane
Unique resource identifier
10.17882/42493
Association Type
Cross reference
Initiative Type
dataset
Metadata language
English
Topic category
  • Oceans
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Begin date
2020
End date
2023
Distribution format
  • NC, NETCDF ( )

  • XLS, XLSX ( )

  • R SCRIPT ( )

OnLine resource
Quality controlled data ( WWW:DOWNLOAD-1.0-link--download )

2010-2023 data - 40 MB

OnLine resource
Quality controlled data ( WWW:DOWNLOAD-1.0-link--download )

Daily mean data 2010-2023 - 858 KB

OnLine resource
R script to read the NetCDF format - 1 KB ( WWW:DOWNLOAD-1.0-link--download )

R script to read the NetCDF format - 1 KB

OnLine resource
Quality controlled data ( WWW:DOWNLOAD-1.0-link--download )

Daily mean data 2010-2022 [RESTRICTED] - 782 KB

OnLine resource
Quality controlled data ( WWW:DOWNLOAD-1.0-link--download )

2010-2022 data [RESTRICTED] - 27 MB

OnLine resource
Quality controlled data ( WWW:DOWNLOAD-1.0-link--download )

2010-2021 data [RESTRICTED] - 26 MB

OnLine resource
DOI of the product ( WWW:LINK-1.0-http--metadata-URL )
OnLine resource
Seanoe ( rel-canonical )
Hierarchy level
Dataset
Statement

NKE (www.nke-instrumentation.fr)

SMATCH with localized chlorination, frequency rotation: 4 months

SP2T / STPS / WiSens CTD with rotation: fortnightly in productive period otherwise monthly.

SeaBird (www.seabird.com)

WetLab ECO FLNTU : Optical sensors which measure chlorophyll fluorescence at 470 nm and turbidity at 700 nm within the same volume. 5 measures at 1Hz every 15 mins. Fluorescence range 0-50 FFU with 0.01 FFU sensitivity / Turbidity range 0-100 NTU with 0.02 NTU sensitivity. No rotation needed, global maintenance at SeaBird facilites every two years.

File identifier
seanoe:86131 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2024-06-27
Metadata standard name
ISO 19115:2003/19139
Metadata standard version
1.0
Point of contact
  Ifremer, Univ Brest, CNRS, IRD, LEMAR, F‐29280, Plouzané, France - PETTON Sebastien
 
 

Overviews

overview
Bay of Brest

Spatial extent

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Keywords

Biological oceanography High frequency Physical oceanography coastal monitoring fluorescence practical salinity sea temperature turbidity
ODATIS aggregation parameters and Essential Variable names
Fluorescence Invertebrates Salinity Sea temperature Turbidity
Type de jeux de donnée ODATIS
/Observational data/in-situ

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