Cetacean NGS sequences from eDNA samples (cyt-b)

In order to better characterize the genetic diversity of Cetaceans and especially the common Dolphin from the Bay of Biscay, sequences from the mitochondrial Cytochrome B region were obtained from water samples acquired close to groups of dolphins.

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Date (Creation)
2022-11-02
Date (Publication)
2025-01-15
Identifier
FR-330-715-368-00032-delmoges_dolphin_CYT-B
Credit
Marbec / Laboratoire Evolution et Génétique des Populations - Projet DELMOGES
Author
  IFREMER - Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
Author
  Université de Brest - Malkocs Tamas
Author
  IFREMER - Cornette Florence
Station de Sète - Avenue Jean Monnet - CS 30171 - 34203 Sète Cedex , Sete , France
04 99 57 32 84
Author
  La Rochelle Université - Méndez-Fernandez Paula
Author
  La Rochelle Université - Spitz Jérôme
Author
  Argaly - Bonin Aurélie
Author
  IFREMER - Reisser Celine
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
Author
  IFREMER - Arnaud-Haond Sophie
Station de Sète - Avenue Jean Monnet - CS 30171 - 34203 Sète Cedex , Sete , France
04 99 57 32 61
04 99 57 32 95
Author
  IFREMER - Noel Cyril
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané , Brest , France
02 98 22 43 34
Author
  IUEM - Viricel-Pante Amelia
Publisher
  IFREMER
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
Use limitation
CC-BY (Creative Commons - Attribution)
Access constraints
Copyright
Use constraints
Other restrictions
Spatial representation type
grid Grid
Metadata language
English
Character set
utf8 UTF8
Topic category
  • Oceans
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Begin date
2022-10-01
End date
2022-06-30
Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6
Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo-extranet/ifremer/marbec/delmoges-dolphin ( NETWORK:LINK )
OnLine resource
Digital Object Identifier (DOI) ( DOI )
Hierarchy level
Dataset
Statement
A total of 21 Waterra capsules were used to sample water close to groups of dolphins in the Bay of Biscay in June 2022. DNA was extracted and libraries were construted for the Cytochrome B region. After purification, these samples were submitted to NGS sequencing. The sequences of the 8 PCR replicates were merged.
File identifier
0ebdc7e0-d0bc-486d-8e49-6a33b45ec8bd XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2025-05-15T21:22:03.394577Z
Metadata standard name
ISO 19115-3 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
 
 

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Keywords

GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
Thèmes Sextant
/Biological Environment/Bioinformatics

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