Date (Creation)

2016-11-29

Identifier

FR-330-715-368-00032-IFR_BIOINFO_PROVIGAS

Identifier

DOI:10.12770/78b72405-f1ca-44a5-ae15-65916de3b2dd

Credit

UMR5244 - Interaction Hotes Pathogenes Environnement - Projet région Occitanie PROVIGAS

GEMET - INSPIRE themes, version 1.0

• Habitats et biotopes

Thèmes Sextant

• /Milieu biologique/Bio-Informatique

ODATIS aggregation parameters and Essential Variable names

• Bioinformatique

Use limitation

Donnée en accès restreint

Access constraints

Restricted

Use constraints

Restricted

Metadata language

Français

Character set

utf8 UTF8

Topic category

• Environment

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

• ( )

OnLine resource

DOI du jeu de donnée ( DOI )

DOI du jeu de donnée

OnLine resource

/home/ref-bioinfo/ifremer/ihpe/provigas ( NETWORK:LINK )

Hierarchy level

Dataset

Statement

Quality check of total RNA and total RNA integrity was analyzed by capillary electrophoresis (Agilent BioAnalyzer 2100) showing no degradation. mRNAs purification and library construction was performed by MGX (Montpellier Genomix, Institut de Génomique fonctionnelle, Montpellier, France) using the Illumina TruSeq Stranded mRNA Sample Preparation kit according to the manufacturer’s protocol. Libraries were sequenced by MGX in single-end, 50 bp length fragments, using an Illumina HiSeq 2500. All Illumina sequenced reads were aligned to the C. gigas V9 reference genome (Zhang et al. 2012) and 73.9% of reads on average mapped on this genome

File identifier

78b72405-f1ca-44a5-ae15-65916de3b2dd XML

Metadata language

Français

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2025-05-15T22:57:07.830405Z

Metadata standard name

ISO 19115-3 - SEXTANT

Metadata standard version

1.0