Date (Creation)

2021-01-01

Date (Publication)

2022-02-02

Identifier

FR-330-715-368-00032-IFR_BIOINFO_SEQ_SARS_OBEPINE

Identifier

DOI:10.12770/90a96749-8fa1-467d-9af8-bd4ab1ae48bd

Credit

Ifremer - Laboratoire Sante Environnement Microbiologie

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

CC-BY (Creative Commons - Attribution)

Access constraints

License

Use constraints

License

Spatial representation type

grid Grid

Metadata language

English

Character set

utf8 UTF8

Begin date

2021-01-01

End date

2021-12-31

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Number of dimensions

0

Cell geometry

Area

Distribution format

• ( )

OnLine resource

/home/ref-bioinfo/ifremer/obepine ( NETWORK:LINK )

OnLine resource

Lien de téléchargement ( WWW:DOWNLOAD )

Lien de téléchargement

OnLine resource

Digital Object Identifier (DOI) ( DOI )

Hierarchy level

Dataset

Statement

Raw wastewaters (WW) were collected weekly from two WW treatment plants in a city in western France. A subsample was ultracentrifuged, nucleic acids axtracted from the pellet, RNA reverse-transcribed and submitted to an optimized ARTIC400 V3 PCR. PCR products were purified, barcoded and adapter-ligated using Oxford Nanopore Technology kits, and libraries sequenced on an R9.4 flow cells using a Mk1c MinION. Results from 6 runs are shared as raw data (fast5 files) and based-called data using Guppy 4.3.4 (fastq files).

File identifier

90a96749-8fa1-467d-9af8-bd4ab1ae48bd XML

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2025-05-15T23:19:16.014581Z

Metadata standard name

ISO 19115-3 - SEXTANT ISO 19115-3 - SEXTANT

Metadata standard version

1.0