Catalogue PIGMA
Antarctic Circumnavigation Expedition ecogenomics - METAGENOMES
Fastq files from illumina sequencing of samples taken by a capsule coupled to rosette CTD probes at different depths (5-1000m) and using different size filters (from 0.22 to 3µM; greater than 3µM). Sequencing was carried out on the genoscope using the same procedure as for the TARA
Simple
- Date (Creation)
- 2019-03-01
- Date (Publication)
- 2021-02-02
- Identifier
- FR-330-715-368-00032-IFR_BIOINFO_SEQ_METAGEN_ACE_ANTARTIC
- Identifier
- DOI:10.12770/9c786963-e6a5-4a1c-95f8-1c6ab8a52d2b
- Credit
- Ifremer - ACE Ecogenomics - Laboratoire de Microbiologie des Environnements Extrêmes (LM2E)
- GEMET - INSPIRE themes, version 1.0
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- Habitats and biotopes
- Thèmes Sextant
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- /Biological Environment/Bioinformatics
- ODATIS aggregation parameters and Essential Variable names
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- Bioinformatics
- Type de jeux de donnée ODATIS
-
- Analysis data
- Use limitation
- CC0 (Creative Commons - Transfer into public domain)
- Access constraints
- License
- Use constraints
- License
- Other constraints
- This work was supported by the ANR ACE Ecogenomics and the University of Brest (UBO)
- Spatial representation type
- grid Grid
- Metadata language
- Français
- Character set
- utf8 UTF8
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- Begin date
- 2016-12-01
- End date
- 2017-03-31
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
Spatial representation info
No information provided.
- Number of dimensions
- 0
- Cell geometry
- Area
- Distribution format
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- OnLine resource
- /home/ref-bioinfo-public/ifremer/lmee/ACE_Ecogenomics ( NETWORK:LINK )
- OnLine resource
-
2023_WGS_ACE_ecogenomics_sequencing
(
WWW:DOWNLOAD
)
2023_WGS_ACE_ecogenomics_sequencing
- OnLine resource
- ENA Publication ( WWW:LINK )
- OnLine resource
- Digital Object Identifier (DOI) ( DOI )
- Hierarchy level
- Dataset
- Statement
- Raw metagenome data and associated environmental data, assemblies and metagenome-assembled genomes obtained during the ACE expedition. These data are linked to the ANR ACE ecogenomics project, which aims to provide a functional, taxonomic and genomic characterisation of the Southern Ocean.
- File identifier
- 9c786963-e6a5-4a1c-95f8-1c6ab8a52d2b XML
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Non geographic dataset
- Date stamp
- 2026-02-27T15:37:08.888106Z
- Metadata standard name
- ISO 19115-3 - SEXTANT
- Metadata standard version
- 1.0
Overviews
Spatial extent
N
S
E
W
Provided by
Associated resources
Not available