Date (Creation)

2021-03-01

Date (Publication)

2025-11-27

Identifier

FR-330-715-368-00032-IFR_BIOINFO_IMOTEP_20230120_GENALG_EB

Credit

Ramaciotti

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

CC-BY-ND (Creative Commons - Attribution, No modification)

Access constraints

License

Use constraints

License

Spatial representation type

grid Grid

Metadata language

English

Character set

utf8 UTF8

Begin date

2021-03-01

End date

2025-10-31

Distribution format

• ( )

OnLine resource

/home/ref-bioinfo/ifremer/rmpf/pmarg_dna_chip ( NETWORK:LINK )

Hierarchy level

Dataset

Statement

A SNP chip of 75K SNPs was previously developed (Ramciotti products) with a total of 69,514 SNPs retained. This chip takes advantage of the genomic resources on P. margaritifera that includes genetic diversity markers across Polynesia (N = 44,867), sex markers (N = 884) as well as SNPs associated with color (N = 99) and SNPs associated with genes differentially expressed (DEG) under thermal stress between the Gambier population and Marquises as well as SNPs identified de novo from RNAseq public datasets (N = 23,664). The first validation of the markers and the tools has been to identify putative related individuals and parent-offspring pedigree using multi-parental spawning datasets. This should serve in supporting further genomic selection programs in French Polynesia. Analysis of genotyping results and proposal of SNP marker panels adapted to different populations or uses.

File identifier

c56bbdca-df1d-4055-a7ae-9ddc408ebb03 XML

Metadata language

English

Character set

UTF8

Hierarchy level

Non geographic dataset

Date stamp

2025-11-27T09:19:19.870917Z

Metadata standard name

ISO 19115-3 - SEXTANT

Metadata standard version

1.0