• Catalogue PIGMA
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Viral target enrichement, Comparison capture kits Library were prepared with the 3 captures Kit (Roche,Twist and Illumina)

Comparison between 3 kits, Roche, Twist Biosciences and Illumina on the ability to enrich environmental samples to viral sequences

Simple

Date (Creation)
2023-04-24
Date (Publication)
2026-05-21
Identifier
FR-330-715-368-00032-IFR_BIOINFO_SEARSE_METABARCODING

Identifier

No information provided.
Credit
Laboratoire Sante Environnement Microbiologie
Publisher
  IFREMER
Author
  IFREMER - Schaeffer Julien ( PDG-DGDS-RBE-MASAE-LSEM )
02 40 37 42 93
Author
  UNIBO - Troja Fulvia
Author
  IFREMER - Desdouits Marion ( PDG-DGDS-RBE-MASAE-LSEM )
02 40 37 42 93
Author
  UNIBO - Indio Valentina
Author
  UNIBO - De Cesare Alessandra
Author
  IFREMER - Le Guyader Soizick ( PDG-DGDS-RBE-MASAE-LSEM )
02 40 37 40 52
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
ODATIS aggregation parameters and Essential Variable names
  • Bioinformatics
Type de jeux de donnée ODATIS
  • Analysis data
Use limitation
CC-BY (Creative Commons - Attribution)
Access constraints
License
Use constraints
License
Spatial representation type
grid Grid
Metadata language
English
Character set
utf8 UTF8
N
S
E
W
thumbnail


Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6
Number of dimensions
0
Cell geometry
Area
Transformation parameter availability
No
Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo/ifremer/sg2m/capture-environmental-virome ( NETWORK:LINK )
OnLine resource
ENA Publication ( WWW:LINK )
Hierarchy level
Dataset
Statement
5 sewage samples were extracted in triplicats with selective extraction protocol.
File identifier
eb3302a8-2405-499c-8854-f7cb8e372859 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Non geographic dataset
Date stamp
2026-05-21T08:24:25.188995Z
Metadata standard name
ISO 19115-3 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Schaeffer Julien ( PDG-DGDS-RBE-MASAE-LSEM )
02 40 37 42 93
 
 

Overviews

overview

Spatial extent

N
S
E
W
thumbnail


Keywords

GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
ODATIS aggregation parameters and Essential Variable names
Bioinformatics
Thèmes Sextant
/Biological Environment/Bioinformatics
Type de jeux de donnée ODATIS
Analysis data

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