• Catalogue PIGMA
  •  
  •  
  •  

ATLAS - Advanced ecosysTem monitoring in ecoLogicAl obServatory

This pilot project aimed at setting a baseline of eDNA integration with other techniques/end users communities, that can be applied on fixed monitoring points such as cabled observatories. It comprises several aspects:

a - monitoring capability aspects on the integration of multiple independent datasets (images, sounds, environmental parameters with molecular genetics approaches), methodological for eDNA (time point sampling using Niskin bottles + filtration vs. autonomous sampler over 24 hours’ period), and use of time-series as a benchmark for comparison.

b - methodological aspects to expand the use of eDNA to evaluate the biodiversity monitoring efficiency in a coastal technological hub. The use of different primer combinations would provide feedback on hidden biodiversity components never measured with present sensor assets.

c - Validation aspects on the pathway or the creation of in-situ operating eco-genomic sensors: Automated eDNA sampler coupled with time point sampling could be redefined in terms of number (more sampling throughout the day) or filtering larger amounts of water. Comparisons in monitoring capabilities by manual sampling and remotely scheduled filtering to be used as a benchmark to set optimum volumes and frequency of filtering.

d - Data processing and statistic elaboration aspects: extract (prior) information from the long time series of OBSEA images, abiotic measurements, and how eDNA can complement the monitoring process, to test hypotheses and cause/effect relationships associated with in situ manipulations.

Simple

Date (Publication)
2021-05-22
Date (Revision)
2024-11-12
Other citation details
Stefanni Sergio, Mirimin Luca, Benedetti-Cecchi Lisandro, Štifanić Mauro, Ivesa Neven, Gavrilovich Ana, Mandić Milica, Lordan Colm, Stanković David, Aguzzi Jacopo, Del Rio Fernandez Joaquin, Mihai Toma Daniel (2021). ATLAS - Advanced ecosysTem monitoring in ecoLogicAl obServatory. SEANOE. https://doi.org/10.17882/95952
Credit
We are extremely thankful to all colleagues from UPC-OBSEA that operated in the field.
Author
  Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy - STEFANNI SERGIO
Author
  Atlantic Technological University, Marine and Freshwater Research Centre, Old Dublin Road, Galway H91 T8NW, Ireland - MIRIMIN LUCA
Author
  Università di Pisa, Dip. di Biologia, Via Derna 1, 56126 Pisa, Italy - BENEDETTI-CECCHI LISANDRO
Author
  Juraj Dobrila University of Pula, Department of natural and health sciences, Zagrebačka 30, HR-52100 Pula, Croatia - ŠTIFANIĆ MAURO
Author
  Juraj Dobrila University of Pula, Department of natural and health sciences, Zagrebačka 30, HR-52100 Pula, Croatia - IVESA NEVEN
Author
  University of Zagreb Faculty of Agriculture, Department of Fisheries, Apiculture, Wildlife management and Special Zoology, Svetošimunska cesta 25, Croatia - GAVRILOVICH ANA
Author
  Institute for Marine Research, I Bokeljske brigade 68, 85330 Kotor, Montenegro - MANDIĆ MILICA
Author
  Marine Institute, Rinville, Oranmore. Co.Galway. H91 R673, Ireland - LORDAN COLM
Author
  Marine Biology Station Piran, National Institute of Biology, Fornače 41, 6330 Piran, Slovenia - STANKOVIĆ DAVID
Author
  ICM-CSIC, Paseo Maritimo de la Barceoneta, 37-49. 08003 Barcelona, Spain - AGUZZI JACOPO
Author
  SARTI-MAR Research Group - OBSEA, Universitat Politècnica de Catalunya, Spain - del Rio Fernandez Joaquin
Author
  SARTI-MAR Research Group - OBSEA, Universitat Politècnica de Catalunya, Spain - Mihai Toma Daniel
Publisher
  SEANOE
Theme
  • eDNA
  • fish metabarcoding
  • video imaging
  • Cross-discipline
project
  • FP7 EMSO (Agreement: 211816)
  • H2020 JERICO-S3 (Agreement: 871153)
SeaDataNet Parameter Disciplines
  • Cross-discipline
Use limitation
CC-BY-NC-ND (Creative Commons - Attribution, No commercial usage, No modification)
Use constraints
Other restrictions
Metadata language
English
Topic category
  • Oceans
N
S
E
W
thumbnail


Begin date
2021-09-06
End date
2021-09-19
Distribution format
  • XLS, XLSX ( )

OnLine resource
Quality controlled data ( WWW:DOWNLOAD-1.0-link--download )

The dataset contains the polished ASVs after Illumina sequencing of 12S and cytb genes for fishes, counts by grouping, species in each sample, and all information associated with the samplings. - 75 KB

OnLine resource
DOI of the product ( DOI )
OnLine resource
Seanoe ( rel-canonical )
Hierarchy level
Dataset
File identifier
seanoe:95952 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2024-11-12
Metadata standard name
ISO 19115:2003/19139
Metadata standard version
1.0
Point of contact
  Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy - STEFANNI SERGIO
 
 

Overviews

overview
Preparation of the autonomous eDNA sampler for deployment

Spatial extent

N
S
E
W
thumbnail


Keywords

Cross-discipline eDNA fish metabarcoding video imaging

Provided by

logo
Access to the portal
Read here the full details and access to the data.

Associated resources

Not available


  •  
  •  
  •