Date (Creation)

2023-11-08

Date (Publication)

2024-01-29

Identifier

FR-330-715-368-00032-IFR_BIOINFO_paldiag_20231123_MARBEC_SL

Credit

IFREMER (MARBEC/LEGPM)

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

CC-BY (Creative Commons - Attribution)

Access constraints

License

Use constraints

License

Spatial representation type

grid Grid

Metadata language

English

Character set

utf8 UTF8

Topic category

• Oceans

Begin date

2023-06-01

End date

2023-07-31

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

• ( )

OnLine resource

/home/ref-bioinfo/ifremer/marbec/paldiag ( NETWORK:LINK )

OnLine resource

Digital Object Identifier (DOI) ( DOI )

Hierarchy level

Dataset

Statement

Seawater was filtered in June-July 2023 in Thau and Berre lagoons. The filtering capsules (24) are Waterra systems using a customized pumping system commercialized by Argaly company. DNA was resuspended in the capsule vigorous agitation after the injection of Longmire buffer, and extracted at Argaly. Whole DNA was used to construct libraries of metabarcoding using 16S primers specific to Veneroidae. Sequencing was performed on a MiSeq sequencer (2X 150 bp). Besides an experiment was conducted in October 2022 in Ifremer Sète and 14 additionnal capsules were obtained from the filtering of water in aquariums filled with different ratio of two clam species.

File identifier

76488bcc-e2c7-4839-a28e-978a2e6eee81 XML

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2025-05-15T22:55:04.849601Z

Metadata standard name

ISO 19115-3 - SEXTANT

Metadata standard version

1.0