Genetic and phenotypic intra-species diversity of alga Tisochrysis lutea

The eleven collected wild strains of T. lutea were compared phenotypically, in particular with regard to their pigment and lipid profiles. The genome of each T. lutea strain was also sequenced to investigate the genetic structure and genome organisation of this species. Collected data were summarized in a genome browser to provide easy-to-use support for the scientific community (https://genomes-catalog.ifremer.fr). This provides an important resource- to understand, exploit and predict the biodiversity of this species.

Date (Creation): 2017-04-01

Date (Publication): 2018-01-29

Identifier: FR-330-715-368-00032-IFR_BIOINFO_DIVTISO_2017

Credit: Ifremer - Laboratoire Physiologie et Biotechnologie des Algues - Projet DynAlgue

Author

IFREMER - Carrier Gregory

Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France

02 40 37 42 61

Author

IFREMER - Berthelier Jeremy

Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France

02 40 37 40 66
02 40 37 40 73

Author

IFREMER - Maupetit Agathe

Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France

02 40 37 40 30

Author

IFREMER - Nicolau Elodie

Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France

Author

Institut Pasteur - Marbouty Martial

Author

IFREMER - Schreiber Nathalie

Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France

Author

IFREMER - Charrier Aurelie

Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France

02 40 37 41 26
02 40 37 42 41

Author

IFREMER - Carcopino Clémence

Author

IFREMER - Leroi Laura

Author

IFREMER - Saint-Jean Bruno

Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France

02 40 37 42 52
02 40 37 42 41

Originator

IFREMER - Laboratoire Physiologie et Biotechnologie des Algues

Publisher

IFREMER

IFREMER Centre de Bretagne ZI Pointe du diable CS 10070 , PLOUZANE , 29280 , France

+33 (0)2 98.22.49.16
+33 (0)2 98.22.46.44
http://data.ifremer.fr/SISMER

GEMET - INSPIRE themes, version 1.0

Habitats and biotopes
Habitats and biotopes
Habitats and biotopes
Habitats and biotopes

Thèmes Sextant

/Biological Environment/Bioinformatics
/Biological Environment/Bioinformatics
/Biological Environment/Bioinformatics
/Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

Bioinformatics

Use limitation: Open Licence

Access constraints: License

Use constraints: License

Metadata language: English

Character set: utf8 UTF8

Topic category

Environment

Reference system identifier: EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

OnLine resource: /home/ref-bioinfo-public/ifremer/phytox/pangenomeTiso ( NETWORK:LINK )

OnLine resource: Lien de téléchargement ( WWW:DOWNLOAD )
Lien de téléchargement

OnLine resource: Digital Object Identifier (DOI) ( DOI )

Hierarchy level: Dataset

Statement: This study is the first step in the characterization of intra-species diversity in Tisochrysis lutea which remains a huge knowledge gap relative to this species importance as a microalga of biotechnological interest.