• Catalogue PIGMA
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Genetic and phenotypic intra-species diversity of alga Tisochrysis lutea

The eleven collected wild strains of T. lutea were compared phenotypically, in particular with regard to their pigment and lipid profiles. The genome of each T. lutea strain was also sequenced to investigate the genetic structure and genome organisation of this species. Collected data were summarized in a genome browser to provide easy-to-use support for the scientific community (https://genomes-catalog.ifremer.fr). This provides an important resource- to understand, exploit and predict the biodiversity of this species.

Simple

Date (Creation)
2017-04-01
Date (Publication)
2018-01-29
Identifier
FR-330-715-368-00032-IFR_BIOINFO_DIVTISO_2017
Credit
Ifremer - Laboratoire Physiologie et Biotechnologie des Algues - Projet DynAlgue
Author
  IFREMER - Carrier Gregory
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 42 61
Author
  IFREMER - Berthelier Jeremy
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 40 66
02 40 37 40 73
Author
  IFREMER - Maupetit Agathe
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 40 30
Author
  IFREMER - Nicolau Elodie
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
Author
  Institut Pasteur - Marbouty Martial
Author
  IFREMER - Schreiber Nathalie
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
Author
  IFREMER - Charrier Aurelie
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 41 26
02 40 37 42 41
Author
  IFREMER - Carcopino Clémence
Author
  IFREMER - Leroi Laura
Author
  IFREMER - Saint-Jean Bruno
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 42 52
02 40 37 42 41
Originator
  IFREMER - Laboratoire Physiologie et Biotechnologie des Algues
Publisher
  IFREMER
IFREMER Centre de Bretagne ZI Pointe du diable CS 10070 , PLOUZANE , 29280 , France
+33 (0)2 98.22.49.16
+33 (0)2 98.22.46.44
http://data.ifremer.fr/SISMER
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
  • Habitats and biotopes
  • Habitats and biotopes
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
  • /Biological Environment/Bioinformatics
  • /Biological Environment/Bioinformatics
  • /Biological Environment/Bioinformatics
ODATIS aggregation parameters and Essential Variable names
  • Bioinformatics
Use limitation
Open Licence
Access constraints
License
Use constraints
License
Metadata language
English
Character set
utf8 UTF8
Topic category
  • Environment
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Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6
Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo-public/ifremer/phytox/pangenomeTiso ( NETWORK:LINK )
OnLine resource
Lien de téléchargement ( WWW:DOWNLOAD )

Lien de téléchargement

OnLine resource
Digital Object Identifier (DOI) ( DOI )
Hierarchy level
Dataset
Statement
This study is the first step in the characterization of intra-species diversity in Tisochrysis lutea which remains a huge knowledge gap relative to this species importance as a microalga of biotechnological interest.
File identifier
446b5602-a4e8-4c2f-a7c4-2f6e77ed4317 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2025-05-15T22:11:04.077206Z
Metadata standard name
ISO 19115-3 - SEXTANT ISO 19115-3 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Carrier Gregory
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 42 61
 
 

Overviews

overview

Spatial extent

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E
W
thumbnail


Keywords

GEMET - INSPIRE themes, version 1.0
Habitats and biotopes Habitats and biotopes Habitats and biotopes Habitats and biotopes
ODATIS aggregation parameters and Essential Variable names
Bioinformatics
Thèmes Sextant
/Biological Environment/Bioinformatics /Biological Environment/Bioinformatics /Biological Environment/Bioinformatics /Biological Environment/Bioinformatics

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