• Catalogue PIGMA
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eDNA sequencing of water, plastic and tissue of Pacific giant clam (Tridacna maxima) in a mesocosm approach for the P3M project, 2023

Here, our study aimed to first assess the influence of plastic on the bacterial community belonging to water, plastic and the microbiome of the giant clam and on the organism's physiology of this putative sentinel species. Our second objective was to identify bacteria whose abundance varies significantly with plastic concentration. Overall, this study will fill the gap towards a better understanding of the impact of plastic pollution on bacterial community assemblages in both inert and living environments.

Simple

Date (Creation)
2023-05-25
Date (Publication)
2024-04-01
Identifier
FR-330-715-368-00032-IFR_BIOINFO_20230601_RMPF_MG_P3M_TRIDACNA_MAXIMA
Credit
Ifremer (RMPF)
Publisher
  IFREMER
Author
  IFREMER - Goulais Maeva
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané , Brest , France
Author
  IFREMER - Benestan Laura
Author
  IFREMER - Darinot Thomas Sophie
Author
  IFREMER - Saulnier Denis
Centre Océanologique du Pacifique - Vairao - BP 49 - 98179 Taravao - Tahiti - Polynésie Française , Tahiti , France
+689 40 54 60 52
+689 40 54 60 99
Author
  IFREMER - Galgani Francois
Centre Océanologique du Pacifique - Vairao - BP 49 - 98179 Taravao - Tahiti - Polynésie Française , Tahiti , France
+689 40 54 60 87
+689 40 54 60 99
Author
  IFREMER - Mitta Guillaume
Centre Océanologique du Pacifique - Vairao - BP 49 - 98179 Taravao - Tahiti - Polynésie Française , Tahiti , France
Author
  IFREMER - Rouxel Julien
Centre Océanologique du Pacifique - Vairao - BP 49 - 98179 Taravao - Tahiti - Polynésie Française , Tahiti , France
Author
  IFREMER - Chevalier Oriane
Author
  IFREMER - Basset Caline
Centre Océanologique du Pacifique - Vairao - BP 49 - 98179 Taravao - Tahiti - Polynésie Française , Tahiti , France
Author
  IFREMER - Fleurot Baptiste
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
ODATIS aggregation parameters and Essential Variable names
  • Bioinformatics
Use limitation
CC-BY (Creative Commons - Attribution)
Access constraints
License
Use constraints
License
Metadata language
English
Character set
utf8 UTF8
Topic category
  • Environment
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Begin date
2022-07-17
End date
2022-09-13
Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6
Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo-public/ifremer/rmpf/P3M ( NETWORK:LINK )
OnLine resource
Download link ( WWW:DOWNLOAD )
OnLine resource
Publication ENA ( WWW:LINK )
OnLine resource
Digital Object Identifier (DOI) ( DOI )
Hierarchy level
Dataset
Statement
This study aimed to evaluate the impact of incrementally increasing plastic concentrations on the bacterial compartment in marine environments. We reproduced simplified tropical ecosystems in 9 seawater mesocosms, then immersed different quantities of macroplastics from pearl farm (copolymers of PP and PE). We then monitored the bacterial communities in three compartments: the water column, the Tridacna maxima and the plastic biofilm to identify the threshold at which modifications in the bacterial compartment occur. The objective was to identify early markers among impacted bacteria, indicative of potential risks exceeding critical thresholds for marine microbial fauna. Despite finding no influence of plastic concentration on bacterial diversity, significant impacts were observed for bacterial assemblages based on time and sample type. Digging deeper, our analysis at the individual bacterial scale revealed that at the highest plastic concentration (5.46g/L), a positive correlation was observed for 29 bacterial genera. This suggests that certain bacterial genera thrive at extreme concentrations of plastic, leading to an overabundance of these specific bacteria referred to here as candidate ASVs. The overabundance of candidate ASVs in ours mesocosms could be attributed to imbalanced competition relationships between bacteria, favouring genera less sensitive to environmental pollutants. Some of these bacteria have known ecological functions, including plastic degradation and pathogenicity, aligning with prior studies warning of the dangers associated with macroplastics in water, potentially promoting the emergence of pathogenic families by serving as substrates and modifying microbial interactions.
File identifier
61da6771-38a5-4043-89af-87209ca51879 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2025-05-15T22:37:44.614964Z
Metadata standard name
ISO 19115-3 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Goulais Maeva
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané , Brest , France
 
 

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Keywords

GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
ODATIS aggregation parameters and Essential Variable names
Bioinformatics
Thèmes Sextant
/Biological Environment/Bioinformatics

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