Date (Creation)

2018-02-01

Identifier

FR-330-715-368-00032-IFR_BIOINFO_PMARG_COLOR_WGS_2018

Credit

Ifremer - Unité Ressources Marines en Polynésie

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

Accès restreint

Access constraints

Restricted

Use constraints

Restricted

Metadata language

English

Character set

utf8 UTF8

Topic category

• Environment

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

• ( )

OnLine resource

/home/ref-bioinfo/ifremer/rmpf/Pmarg_color_WGS_2018 ( NETWORK:LINK )

Hierarchy level

Dataset

Statement

The present dataset was acquired through the convention AMELIGEN between Ifremer, DRMM and CRIOBE. Fresh mantle tissue was dissected from individuals of 4 different populations (Katiou, Rikitea, Takapoto, and hatchery from Gambier) and 3 different color phenotypes of P. margaritifera. DNA extraction performed with a Qiagen Blood and Tissue kit (Qiagen), following manufacturer's indications. Each sample represent a pool of about 20 individuals from a unique geographic location and for a unique phenotype. Sequences were obtained though a shotgun PCRfree 150PE sequencing on a HiSeq X Ten machine (with TruSeq LT adapters). Sample QC and libraries preparation and QC were performed by Genome Quebec, Quebec, Canada. The present dataset is composed of the raw output produced directly by Genome Quebec (fastq.gz format) for the 12 DNA pools sequenced (three phenotypes per population, four populations).

File identifier

e0a8f7bc-423d-4043-b997-d839a083f01b XML

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2025-05-16T09:16:16.177687Z

Metadata standard name

ISO 19115-3 - SEXTANT

Metadata standard version

1.0