Date (Creation)

2022-04-11

Date (Publication)

2022-04-11

Identifier

FR-330-715-368-00032-IFR_BIOINFO_GEN_GAMBUSIA_HOLBROOKI

Identifier

DOI:10.12770/82a8bf83-37b7-43c6-b81d-fdd227b80f61

Credit

Ifremer - Laboratoire Evolution et Génétique des Populations (MARBEC-LEGPM)

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

CC-BY-NC-ND (Creative Commons - Attribution, No commercial usage, No modification)

Access constraints

License

Use constraints

License

Spatial representation type

grid Grid

Metadata language

English

Character set

utf8 UTF8

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Number of dimensions

0

Cell geometry

Area

Distribution format

• ( )

OnLine resource

/home/ref-bioinfo/ifremer/marbec/gamboc ( NETWORK:LINK )

OnLine resource

Digital Object Identifier (DOI) ( DOI )

Hierarchy level

Dataset

Statement

Raw reads from Hi-C library of 12 pooled blood samples from Gambusia holbrooki males of the population in The Université Paul Valery, Montpellier, France.

Raw reads for the assembly of Gambusia holbrooki genome obtained from:

- PacBio HiFi sequencing of 1 SMRT cell of high molecular weight DNA from a male fish (whole body except scales, eyes, gut and stomac)

- Hi-C sequencing of blood sample from male fishes.

File identifier

82a8bf83-37b7-43c6-b81d-fdd227b80f61 XML

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2025-05-15T23:06:25.468237Z

Metadata standard name

ISO 19115-3 - SEXTANT

Metadata standard version

1.0