• Catalogue PIGMA
  •  
  •  
  •  

Common dolphin (Delphinus delphis) and other delphinid sdRAD-seq sequences, digested with the SbfI enzyme

In order to better characterize the population structure of common dolphins (Delphinus delphis) in the Bay of Biscay, a single digest RADseq (SbfI enzyme) protocol was used to obtain paired-end, 150bp NGS sequences on the Illumina NovaSeq 6000 sequencing platform. D. delphis samples from the Western North Atlantic, and samples from three other delphinid species were included as outgroups.

Simple

Date (Creation)
2025-01-31
Date (Publication)
2025-02-06
Identifier
FR-330-715-368-00032-delmoges_dolphin_sdRAD_SEQ
Credit
Marbec / Laboratoire Evolution et Génétique des Populations and UBO - Projet DELMOGES
Publisher
  IFREMER
Author
  LEMAR, UMR 6539 UBO/CNRS/IRD/Ifremer, Institut Universitaire Européen de la Mer, 29280 Plouzané, France & LIENSs, UMR7266 La Rochelle Université/CNRS, 17000 La Rochelle, France - Malkocs, Tamas
Author
  Observatoire Pelagis, UAR 3462 La Rochelle Université/CNRS, 17000 La Rochelle, France - Méndez-Fernandez Paula
Author
  Observatoire Pelagis, UAR 3462 La Rochelle Université/CNRS, 17000 La Rochelle, France - Dabin, Willy
Author
  Florida International University North Miami, USA - Kiszka, Jeremy
Author
  MARBEC (Marine Biodiversity, Exploitation, and Conservation), UMR IRD/Ifremer/Université de Montpellier/CNRS, 34203 Sète cedex, France - Tixier, Paul
Author
  CEMMA (Coordinadora para o Estudo dos Mamiferos Mariños), PO Box 15, 36380 Gondomar (Pontevedra), Spain - Covelo, Pablo
Author
  CEMMA (Coordinadora para o Estudo dos Mamiferos Mariños), PO Box 15, 36380 Gondomar (Pontevedra), Spain - Pin, Xabier
Author
  CEMMA (Coordinadora para o Estudo dos Mamiferos Mariños), PO Box 15, 36380 Gondomar (Pontevedra), Spain & Department of Biology & CESAM & ECOMARE/CPRAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal - López, Alfredo
Author
  Department of Biology & CESAM & ECOMARE/CPRAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal - Torres-Pereira, Andreia
Author
  Department of Biology & CESAM & ECOMARE/CPRAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal - Eira, Catarina
Author
  MARE – Marine and Environmental Sciences Centre, Regional Agency for the Development of Research (ARDITI), Funchal, Portugal & Faculty of Life Sciences, University of Madeira, Portugal - Alves, Filipe
Author
  MARE – Marine and Environmental Sciences Centre, Regional Agency for the Development of Research (ARDITI), Funchal, Portugal & Faculty of Life Sciences, University of Madeira, Portugal - Ferreira, Rita
Author
  MGX-Montpellier GenomiX, Université de Montpellier, CNRS, INSERM, Montpellier, France - Longequeue, Emily
Author
  MARBEC (Marine Biodiversity, Exploitation, and Conservation), UMR IRD/Ifremer/Université de Montpellier/CNRS, 34203 Sète cedex, France - Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
04 67 14 36 72
Author
  LEMAR, UMR 6539 UBO/CNRS/IRD/Ifremer, Institut Universitaire Européen de la Mer, 29280 Plouzané, France - Viricel, Amelia
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
Use limitation
CC-BY (Creative Commons - Attribution)
Access constraints
Copyright
Use constraints
Other restrictions
Spatial representation type
grid Grid
Metadata language
English
Character set
utf8 UTF8
Topic category
  • Oceans
N
S
E
W
thumbnail


Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6
Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo-extranet/ifremer/marbec/delmoges-rad ( NETWORK:LINK )
OnLine resource
Digital Object Identifier (DOI) ( DOI )
Hierarchy level
Dataset
Statement
A total of 137 individuals were sequenced (110 individuals of Delphinus delphis, including 4 technical replicates; 4 Stenella coeruleoalba; 4 Cephalorhynchus commersonii; 1 Orcinus orca). Libraries were prepared and sequenced by Montpellier GenomiX in 2024. The raw reads were demultiplexed, and PCR clones were filtered.
File identifier
e4be6a50-9b54-4b81-85de-f94c09fa9286 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2025-05-16T09:19:44.122718Z
Metadata standard name
ISO 19115-3 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
 
 

Overviews

overview

Spatial extent

N
S
E
W
thumbnail


Keywords

GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
Thèmes Sextant
/Biological Environment/Bioinformatics

Provided by

logo
Access to the portal
Read here the full details and access to the data.

Associated resources

Not available


  •  
  •  
  •