• Catalogue PIGMA
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3D otolith mesh dataset of red mullet (Mullus barbatus) in the Mediterranean Sea

This dataset includes 3D sagittal left otolith meshes obtained from 339 individual red mullet (Mullus barbatus) specimens. These samples were collected from 17 distinct geographical locations spanning the whole Mediterranean Sea. Recorded biological parameters include fish total length (TL, ranging from 125 to 238 mm), total weight (W, ranging from 14.9 to 168.0 g), sex, and sexual maturity staging. The 3D otolith dataset consists of high-resolution meshes obtained through microtomography (29.2 m voxel size). The dataset provides valuable insights into the morphological variability and population structure of red mullet populations in the Mediterranean Sea.

Simple

Date (Publication)
2024
Date (Revision)
2024-06-26
Other citation details
Andrialovanirina Nicolas, Poloni Lauriane, Laffont Rémi, Poisson Caillault Emilie, Couette Sébastien, Mahé Kelig (2024). 3D otolith mesh dataset of red mullet (Mullus barbatus) in the Mediterranean Sea. SEANOE. https://doi.org/10.17882/99980
Credit
This work has benefited from the grant “ANR-21-EXES-00 11” as part of the IFSEA graduate school (which originates from National Research Agency under the Investments for the Future program), the French Federative Research Structure (SFR Campus de la mer, project No. 2022.7). The otoliths come from the Specific Contract No. 03_EASME/EMFF/2017/1.3.2.3/01/SI2.793201 (MED_UNITs) financed by the European Union. This work is also a contribution to the e-Col+ project funded by the Programme d’Investissements d’Avenir (ANR 21 ESRE 0053). The GISMO platform (Biogéosciences, University Bourgogne Franche-Comté, UMR CNRS 6282, France) was used for the acquisition of 3D images.
Author
  Univ. Littoral Cote d’Opale, UR 4491, LISIC, Calais, F-62100, France Ifremer, Fisheries Laboratory, 150 quai Gambetta, Boulogne-sur-Mer, 62321, France - ANDRIALOVANIRINA Nicolas
Author
  Ecole Pratique des Hautes Etudes, PSL Universit Paris, 75014, France UMR CNRS 6282 Biogeosciences, Université de Bourgogne, 6 Bd Gabriel, Dijon, 21000, France - Poloni Lauriane
Author
  UMR CNRS 6282 Biogeosciences, Université de Bourgogne, 6 Bd Gabriel, Dijon, 21000, France - Laffont Rémi
Author
  Univ. Littoral Cote d’Opale, UR 4491, LISIC, Calais, F-62100, France - Poisson Caillault Emilie
Author
  Ecole Pratique des Hautes Etudes, PSL Universit Paris, 75014, France UMR CNRS 6282 Biogeosciences, Université de Bourgogne, 6 Bd Gabriel, Dijon, 21000, France - Couette Sébastien
Author
  Ecole Pratique des Hautes Etudes, PSL Universit Paris, 75014, France UMR CNRS 6282 Biogeosciences, Université de Bourgogne, 6 Bd Gabriel, Dijon, 21000, France - MAHé Kelig
Publisher
  SEANOE
Theme
  • 3D
  • otolith
  • red mullet
  • Mediterranean Sea
  • shape analysis
  • stock identification
  • Biological oceanography
ODATIS aggregation parameters and Essential Variable names
  • Fish
SeaDataNet Parameter Disciplines
  • Biological oceanography
Type de jeux de donnée ODATIS
  • Aggregate data
Use limitation
CC-BY (Creative Commons - Attribution)
Use constraints
Other restrictions
Date (Publication)
2024
Publisher
  Nature Research
Author
  Andrialovanirina Nicolas
Author
  Poloni Lauriane
Author
  Laffont Rémi
Author
  Poisson-Caillault Emilie
Author
  Couette Sébastien
Author
  Mahe Kelig
Unique resource identifier
10.1038/s41597-024-03641-1
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2023
Publisher
  MDPI
Author
  ANDRIALOVANIRINA NICOLAS
Author
  POISSON CAILLAULT EMILIE
Author
  COUETTE SÉBASTIEN
Author
  LAFFONT RÉMI
Author
  POLONI LAURIANE
Author
  LUTET-TOTI CAMILLE
Author
  MAHE KELIG
Unique resource identifier
10.3390/sym15051067
Association Type
Cross reference
Initiative Type
Study
Unique resource identifier
10.17600/18000921
Association Type
Cross reference
Initiative Type
Platform
Metadata language
English
Topic category
  • Oceans
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Distribution format
  • TEXTE ( )

  • IMAGE ( )

OnLine resource
Raw data ( WWW:DOWNLOAD-1.0-link--download )

X-ray images acquisition parameters - 3 KB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Virtual slices reconstruction parameters - 3 KB

OnLine resource
Data description - 2 KB ( WWW:DOWNLOAD-1.0-link--download )

Data description - 2 KB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Six landmarks - 65 KB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Fish biological and catch informations - 40 KB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

3D left otoliths mesh of red mullet - 205 MB

OnLine resource
DOI of the product ( WWW:LINK-1.0-http--metadata-URL )
OnLine resource
Seanoe ( rel-canonical )
Hierarchy level
Dataset
Statement
X-ray microtomograph (UCT) Skyscan 1174 (Bruker). For more information, see .log files.
File identifier
seanoe:99980 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2024-06-26
Metadata standard name
ISO 19115:2003/19139
Metadata standard version
1.0
Point of contact
  Univ. Littoral Cote d’Opale, UR 4491, LISIC, Calais, F-62100, France Ifremer, Fisheries Laboratory, 150 quai Gambetta, Boulogne-sur-Mer, 62321, France - ANDRIALOVANIRINA Nicolas
 
 

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S
E
W
thumbnail


Keywords

3D Biological oceanography Mediterranean Sea otolith red mullet shape analysis stock identification
ODATIS aggregation parameters and Essential Variable names
Fish
Type de jeux de donnée ODATIS
Aggregate data

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