• Catalogue PIGMA
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satellIte phytoplaNkton Drivers In the Global Ocean over 1998-2015 (INDIGO Benchmark dataset)

This benchmark dataset contains the physical data used as predictors to reconstruct global chlorophyll-a concentrations (Chl, a proxy of phytoplankton biomass) in Roussillon et al., as well as the reference satellite Chl target fields. The nine physical predictors' data (Short-Wave radiations, Sea Surface Temperature, Sea Level Anomaly, Zonal and meridional surface currents, Zonal and meridional surface wind stress, Bathymetry, Binary continental mask) were extracted from publicly available datasets over [1998-2015] and resampled to the same spatio-temporel resolution as Chl, i.e. monthly on a 1°x1° grid between 50°N and 50°S. Missing values were gap-filled using the heat diffusion equation. Each variable was normalized by substracting its mean from the original values and dividing by its standard deviation over [1998-2015].

This dataset was used to train and validate the Multi-Mode Convolutional Neural network (CNNMM8) introduced in Roussillon et al. ; reconstructed monthly Chl fields over the [2012-2015] test period are also provided here.

We hope this benchmark dataset can help to promote the improvements of methods as well as the emergence of new ideas, as building datasets is sometimes more time-consuming than the implementation of machine learning tools themselves. This would also facilitate the quantitative comparison of models performances' on the exact same datasets.

Simple

Date (Publication)
2022-11
Date (Revision)
2023-03-24
Other citation details
Roussillon Joana, Fablet Ronan, Gorgues Thomas, Drumetz Lucas, Littaye Jean, Martinez Elodie (2022). satellIte phytoplaNkton Drivers In the Global Ocean over 1998-2015 (INDIGO Benchmark dataset). SEANOE. https://doi.org/10.17882/91910
Author
  UMR6523 Laboratoire d'Oceanographie Physique et Spatiale (LOPS), France - Roussillon Joana
Author
  IMT Atlantique, Lab-STICC, UMR CNRS 6285, France - Fablet Ronan
Author
  UMR6523 Laboratoire d'Oceanographie Physique et Spatiale (LOPS), France - Gorgues Thomas
Author
  IMT Atlantique, Lab-STICC, UMR CNRS 6285, France - Drumetz Lucas
Author
  UMR6523 Laboratoire d'Oceanographie Physique et Spatiale (LOPS), France - Littaye Jean
Author
  UMR6523 Laboratoire d'Oceanographie Physique et Spatiale (LOPS), France - Martinez Elodie
Publisher
  SEANOE
Theme
  • phytoplankton physical drivers
  • satellite ocean color
  • time-series regression
  • global scale
  • deep learning
  • benchmark
  • Biological oceanography
  • Physical oceanography
ODATIS aggregation parameters and Essential Variable names
  • Ocean colour
  • Phytoplankton
  • Pigments
SeaDataNet Parameter Disciplines
  • Biological oceanography
  • Physical oceanography
Type de jeux de donnée ODATIS
  • Aggregate data
Use limitation
CC-BY (Creative Commons - Attribution)
Use constraints
Other restrictions
Date (Publication)
2023
Publisher
  Frontiers Media SA
Author
  ROUSSILLON JOANA
Author
  FABLET RONAN
Author
  GORGUES THOMAS
Author
  DRUMETZ LUCAS
Author
  LITTAYE JEAN
Author
  MARTINEZ ELODIE
Unique resource identifier
10.3389/fmars.2023.1077623
Association Type
Cross reference
Initiative Type
Study
Metadata language
English
Topic category
  • Oceans
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Begin date
1998-01-01
End date
2015-12-31
Distribution format
  • NUMPY ARRAY ( )

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Normalized physical input data over 1998-2015 - 945 MB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Reference target satellite Chl over 1998-2015 - 105 MB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Reconstructed Chl over 2012-2015 test period - 23 MB

OnLine resource
DOI of the product ( WWW:LINK-1.0-http--metadata-URL )
OnLine resource
Seanoe ( rel-canonical )
Hierarchy level
Dataset
File identifier
seanoe:91910 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2023-03-24
Metadata standard name
ISO 19115:2003/19139
Metadata standard version
1.0
Point of contact
 
 
 

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Spatial extent

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Keywords

Biological oceanography Physical oceanography benchmark deep learning global scale phytoplankton physical drivers satellite ocean color time-series regression
ODATIS aggregation parameters and Essential Variable names
Ocean colour Phytoplankton Pigments
Type de jeux de donnée ODATIS
Aggregate data

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