Data processing and statistical analysis of the metabolic profiles of Haslea ostrearia

Metabolome of of the marine diatom Haslea ostrearia.

Bacteria were isolated from Haslea ostrearia isolates cultivated in ES 1/3 medium in laboratory conditions over a 3-month period. These microalgal isolates were recovered from four sites on the French Atlantic coast: Bouin , La Barre-de-Monts (46.90 N; 2.11°W), Isle de Ré (46.22 N; 1.45°W), and La Tremblade (45.80 N; 1.15°W) . Data processing and statistical analysis of the metabolic profiles were performed on an LC/MS Metabolomics Discovery Workflow using Mass Profiler Professional Software and an Agilent 1290 Infinity II LC system coupled to an Agilent 6540 UHD Accurate-Mass QTOF hybrid mass spectrometer (Agilent Technologies, Waldbronn, Germany) equipped with a dual electrospray ionization (ESI) source.

The full history (tools, parameters, input and output data

files) is publicly available on http://dx.doi.org/10.12770/046e1e6a-864e-48a6-944b-d8613d67de0f

Date (Creation): 2015-05-19

Date (Publication): 2018-01-22

Identifier: FR-330-715-368-00032-DATARMOR_BIOINFO_COSELMAR_HASLEA_OSTREARIA

Identifier: DOI:10.12770/046e1e6a-864e-48a6-944b-d8613d67de0f

Credit: Projet COSELMAR - Laboratoire Phycotoxines

Author

IFREMER - Mondeguer Florence

Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France

02 40 37 41 74

Publisher

IFREMER

GEMET - INSPIRE themes, version 1.0

Habitats and biotopes

Thèmes Sextant

/Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

Bioinformatics

Use limitation: Data under Licence ouverte / Open licence : http://www.etalab.gouv.fr/pages/licence-ouverte-open-licence-5899923.html

Access constraints: Copyright

Use constraints: License

Spatial representation type: grid Grid

Metadata language: English

Character set: utf8 UTF8

Topic category

Oceans

Reference system identifier: EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

OnLine resource: Publication ( WWW:LINK )
Lépinay, A., Capiaux, H., Turpin, V., Mondeguer, F. and Lebeau, T. (2016). "Bacterial community structure of the marine diatom Haslea ostrearia." Algal Research 16: 418-426.

OnLine resource: /home/ref-bioinfo-public/ifremer/dyneco/COSELMAR/ ( NETWORK:LINK )

OnLine resource: Data access ( WWW:DOWNLOAD )

OnLine resource: DOI of the dataset ( DOI )

Hierarchy level: Dataset

Statement: The interpretation of UHPLC-QTOF-MS metabolomics data set was performed using chemometrics platform Agilent Mass Profiler Professional (MPP)