• Catalogue PIGMA
  •  
  •  
  •  

Enzyme Methyl sequençing of coral samples from different geographical regions under contrasted thermal regimes

This dataset contains libraries of 3 coral species: Acropora hyacinthus, Porites lobata and Poscillopora acuta. In three islands with contrasting thermal regimes, the three species were sampled and brought back to the laboratory to induce an experimental thermal stress. The different colonies were split into two conditions. One part was placed in tanks filled with seawater at a given control temperature, the other part in tanks where the water temperature was increased. The samples in this dataset correspond to part of the control condition samples from French Polynesia and New Caledonia.

Simple

Date (Creation)
2023-11-07
Date (Publication)
2024-01-19
Identifier
FR-330-715-368-00032-IFR_BIOINFO_SAVE_SEQ_DNA
Credit
Plateforme INTEGRAGEN
Author
  IFREMER - Vidal Dupiol Jeremie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
04 67 14 36 84
Author
  UPVD - Rey Olivier
Author
  IFREMER - Buso Pauline
Author
  UPVD - Toulza Eve
Author
  IFREMER - Romatif Océane
Author
  IFREMER - Pouzadoux Juliette
Author
  EPHE - Clerissi Camille
Author
  CCC - Bonito Victor
Author
  IRD - Rodolfo-Metalpa Riccardo
Author
  IRD - Houlbreque Fanny
Author
  Aquarium Monaco - Fouré Laurent
Author
  IFREMER - Mitta Guillaume
Centre Océanologique du Pacifique - Vairao - BP 49 - 98179 Taravao - Tahiti - Polynésie Française , Tahiti , France
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
ODATIS aggregation parameters and Essential Variable names
  • Bioinformatics
Use limitation
CC-BY (Creative Commons - Attribution)
Access constraints
Restricted
Use constraints
Restricted
Spatial representation type
grid Grid
Metadata language
English
Character set
utf8 UTF8
Topic category
  • Oceans
N
S
E
W
thumbnail


Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6
Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo/ifremer/ihpe/coral-save ( NETWORK:LINK )
Hierarchy level
Dataset
Statement

Earth is experiencing environmental changes accelerating biodiversity erosion. Coral reefs are one of the most affected ecosystems by these changes because it relies on corals that leave at their upper thermal limit. Corals intraspecific diversity is crucial for their maintenance since it defines the adaptive potential of organisms in the face of current changes. Intraspecific diversity initially encompasses genetic, phenotypic and functional diversity within a species. However, non-genetically encoded elements such as the epigenetic information and the holobiont composition can vary between individuals and contribute to phenotypic adjustment. This project will combine sequencing technologies and innovative approaches to: i) better understand the spatial and temporal dynamics of intraspecific diversity in corals; ii) understand the genetic, epigenetic and microbial mechanisms of coral adaptation/acclimatization to thermal stress and iii) identify biomarkers of thermotolerance to enhance ecosystem management. These will be achieved by studying in space and time natural coral populations along an ecological gradient of thermal stress frequency and an integrative Omic approach.

The sequences of the 124 samples (control treatement) were carried out by the INTEGRAGEN platform. The samples of 3 species come from New Caledonia and French Polynesia.

Sequencing platform : NovaSeq

Control Software : 1.8.1

Primary Analysis RTA : 3.4.4

Type of sequencing : 2 * 150 bases

Index size : 17

Sequencing chemistry : 1.8.0

Mismatches : 0

With failed reads: no

Adapter sequence : none

File identifier
1f0f2c1d-f4af-4292-b530-da1ff94323d2 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2025-05-15T21:36:00.58937Z
Metadata standard name
ISO 19115-3 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Vidal Dupiol Jeremie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
04 67 14 36 84
 
 

Overviews

overview

Spatial extent

N
S
E
W
thumbnail


Keywords

GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
ODATIS aggregation parameters and Essential Variable names
Bioinformatics
Thèmes Sextant
/Biological Environment/Bioinformatics

Provided by

logo
Access to the portal
Read here the full details and access to the data.

Associated resources

Not available


  •  
  •  
  •