Fish NGS sequences associated to cetaceans from eDNA samples

In order to better characterize the fish biodiversity associated to the presence of cetaceans, especially the common Dolphin, from the Bay of Biscay, sequences from a 16S fragment were obtained from water samples acquired close to groups of dolphins.

Simple

Date (Creation)
2023-11-13
Date (Publication)
2024-01-29
Identifier
FR-330-715-368-00032-IFR_BIOINFO_delmoges_20231123_MARBEC_SL

Identifier

No information provided.
Credit
IFREMER (MARBEC/LEGPM)
Publisher
  IFREMER
Author
  IFREMER - Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
Author
  Université de Brest - Malkocs Tamas
Author
  IFREMER - Cornette Florence
Station de Sète - Avenue Jean Monnet - CS 30171 - 34203 Sète Cedex , Sete , France
04 99 57 32 84
Author
  La Rochelle Université - Méndez-Fernandez Paula
Author
  La Rochelle Université - Spitz Jérôme
Author
  Argaly - Bonin Aurélie
Author
  IFREMER - Reisser Celine
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
04 67 14 36 72
Author
  IFREMER - Arnaud-Haond Sophie
Station de Sète - Avenue Jean Monnet - CS 30171 - 34203 Sète Cedex , Sete , France
04 99 57 32 61
Author
  IFREMER - Noel Cyril
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané , Brest , France
02 98 22 43 34
Author
  Université de Brest - Viricel-Pante Amelia
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
ODATIS aggregation parameters and Essential Variable names
  • Bioinformatics
Use limitation
CC-BY (Creative Commons - Attribution)
Access constraints
License
Use constraints
License
Spatial representation type
grid Grid
Metadata language
English
Character set
utf8 UTF8
Topic category
  • Oceans
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S
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W
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Begin date
2022-06-01
End date
2022-06-30
Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6

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Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo-extranet/ifremer/marbec/delmoges-fish-2022 ( NETWORK:LINK )
OnLine resource
Digital Object Identifier (DOI) ( DOI )
Hierarchy level
Dataset
Statement
A total of 21 Waterra capsules were used to samples about 80l of water close to groups of dolphins in the Bay of Biscay in June 2022. DNA was extracted and libraries were construted for a 16S mitochondrial fragment. After purification, 8 replicates of each sample were submitted to NGS sequencing.
File identifier
7c2b753e-ba6d-46a9-ba8d-56e5a075970d XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2025-05-15T22:59:56.706588Z
Metadata standard name
ISO 19115-3 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
 
 

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N
S
E
W
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Keywords

GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
ODATIS aggregation parameters and Essential Variable names
Bioinformatics
Thèmes Sextant
/Biological Environment/Bioinformatics

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