• Catalogue PIGMA
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Minimum level of taxonomic identification of benthic invertebrates by-catches on Ifremer's fisheries vessel

Ifremer conducts numerous fisheries surveys dedicated to benthic and demersal populations (commercial / non-commercial fishes and invertebrates). For several years, in application of the ecosystem approach, all benthic invertebrate fauna collected in fishing gear has been systematically monitored: megabenthic invertebrates captured have been sorted, identified, counted and weighted. All these surveys are based on fixed or random stratified sampling strategy with varying intensity depending on the covered survey area. These data are stored, in historical access-based databases or for the most recent years in the centralised “Harmonie” database held in the Ifremer Fishery Information Systeme (SIH). The species nomenclature used was standardized using WoRMS database.

Taxa caught at least once a year are listed for each monitoring area on the basis of already available data series. In order to facilitate the identification of individuals sampled on board vessels and to improve the training of onboard scientists, the present work aims to define the minimum level of identification for each of them. The analysis identifies taxa that appears recurrently on available historical series or gathers them on less precise taxonomic levels if this is not the case, which may indicate potential identification difficulties. The following procedure was used: all taxa expressed at the species level were first aggregated at genus level if they occurred less 90% of the years over the available time series. For MEDITS, EPIBENGOL and ORHAGO, the occurrence threshold was set to 70% and to only 50% for NOURMONT because the datasets were less than 10 years long. Then to be kept at that taxonomic level, a given genus had to be observed over 90% of the time (for example over at least 9 years if the dataset contains 10 years). Otherwise it was iteratively regrouped into a higher taxonomic level (family, order, class, division) following the same criteria (Foveau et al, 2017). For instance, for the NOURSEINE survey, this resulted into the aggregation of the 103 origin taxa into 35 taxonomic groups. The name of the final taxon after data processing represents the minimum level of identification defined by the analysis. However, these results are very theoretical. This is why they were sent to scientists who embark regularly in order to refine the level of taxonomic identification with field experience.

The first dataset is composed of 8 tables relevant to the different vessel surveys. The first column of each table represents the permanent code of the taxon in the Ifremer taxonomic referential, the second the systematic number and the third the species abbreviated code. The other columns are the different taxonomic levels of the taxon. The minimum level of identification at sea defined by the data processing appears in blue. The level determined by feedback of scientist’s field experience, which is the one to use at sea, appears in green. The second dataset summaries the results detailed in the first table and indicates directly for each taxon identified to far, the minimum level of identification required for the benthic invertebrates by-catch of each fisheries surveys studied.

Simple

Date (Publication)
2019-08
Date (Revision)
2021-05-12
Other citation details
Hazevis Gaëtan, Baudrier Jerome, Vaz Sandrine (2019). Minimum level of taxonomic identification of benthic invertebrates by-catches on Ifremer's fisheries vessel. SEANOE. https://doi.org/10.17882/62260
Credit
The authors want to thank all the scientific staff and vessel crews who collect data used in this study and everyone who contributed to the proposition of the minimum level of taxonomic identification.
Author
  Ifremer Nantes, Département Océanographie et Dynamique des Ecosystèmes, Service Valorisation de l’Information pour la Gestion Intégrée Et la Surveillance - Hazevis Gaëtan
Author
  Ifremer Nantes, Département Océanographie et Dynamique des Ecosystèmes, Service Valorisation de l’Information pour la Gestion Intégrée Et la Surveillance - BAUDRIER Jerome
Author
  Unité MARine Biodiversity Exploitation and Conservation, Ifremer Sète, Université de Montpellier, IRD, CNRS - VAZ Sandrine
Publisher
  SEANOE
Theme
  • Marine Strategy Framework Directive
  • benthic fauna
  • fisheries research surveys
  • taxonomic level
  • identification
  • Fisheries and aquaculture
ODATIS aggregation parameters and Essential Variable names
  • Invertebrates
SeaDataNet Parameter Disciplines
  • Fisheries and aquaculture
Type de jeux de donnée ODATIS
  • /Observational data/in-situ
Use limitation
CC-BY-ND (Creative Commons - Attribution, No modification)
Use constraints
Other restrictions
Other constraints
Data are published without any warranty, express or implied. The user assumes all risk arising from his/her use of data. Data are intended to be research-quality, but it is possible that these data themselves contain errors. It is the sole responsibility of the user to assess if the data are appropriate for his/her use, and to interpret the data, data quality, and data accuracy accordingly. Authors welcome users to ask questions and report problems.
Date (Publication)
2017
Publisher
  Public Library Science
Author
  FOVEAU AURELIE
Author
  VAZ SANDRINE
Author
  DESROY NICOLAS
Author
  KOSTYLEV VLADIMIR E.
Unique resource identifier
10.1371/journal.pone.0184486
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2019
Publisher
  SEANOE
Author
  Vaz
Author
  Sandrine
Author
  Auber
Author
  Arnaud
Author
  Coppin
Author
  Franck
Author
  Desroy
Author
  Nicolas
Author
  Foveau
Author
  Aurelie
Author
  Goascoz
Author
  Nicolas
Author
  Lazard
Author
  Coline
Author
  Le Roy
Author
  Didier
Author
  Martin
Author
  Jocelyne
Author
  Quinquis
Author
  Jerome
Author
  Rouquette
Author
  Manuel
Author
  Travers-Trolet
Author
  Morgane
Author
  Verin
Author
  Yves
Unique resource identifier
10.17882/59595
Association Type
Cross reference
Initiative Type
dataset
Unique resource identifier
10.17600/14001900
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/11
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/24
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.17600/18000589
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/8
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/17
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/7
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/244
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/22
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/138
Association Type
Cross reference
Initiative Type
Platform
Unique resource identifier
10.18142/23
Association Type
Cross reference
Initiative Type
Platform
Metadata language
English
Topic category
  • Oceans
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Distribution format
  • XLS, XLSX ( )

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

ID Taxa - 1 MB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Synthetic ID taxa - 493 KB

OnLine resource
DOI of the product ( WWW:LINK-1.0-http--metadata-URL )
OnLine resource
Seanoe ( rel-canonical )
Hierarchy level
Dataset
Statement

Data provided in these files are raw data processed. Raw data are collected by beam trawl on ORHAGO and nursery surveys, Very High Vertical Opening (VHVO) bottom trawls (or “GOV”) on IBTS, CGFS, CAMANOC, EVHOE, MEDITS, EPIBENGOL surveys and dredge on COMOR survey. Fisheries vessel surveys are carried out either on board of Research Vessels or professional fishing vessels where sampling gears are well adapted for catching demersal species (in particular fish and cephalopods). Temporal series used on this study are the following ones:

- NURSE: 2000-2005 / 2008-2010 / 2012 / 2014-2017

- NOURSEINE: 1995-1998 / 2000-2002 / 2008-2010 / 2017-2018

- NOURMONT: 2017-2018

- IBTS/CGFS: 2006-2018 and CAMANOC: 2014

- EVHOE: 2008-2018

- MEDITS: 2012-2018 and EPIBENGOL: 2018

- ORHAGO: 2011-2018

- COMOR: 1998-2016  

File identifier
seanoe:62260 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2021-05-12
Metadata standard name
ISO 19115:2003/19139
Metadata standard version
1.0
Point of contact
 
 
 

Overviews

overview
Sorting and identification of benthic fauna

Spatial extent

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Keywords

Fisheries and aquaculture Marine Strategy Framework Directive benthic fauna fisheries research surveys identification taxonomic level
ODATIS aggregation parameters and Essential Variable names
Invertebrates
Type de jeux de donnée ODATIS
/Observational data/in-situ

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