• Catalogue PIGMA
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Data for CKMR abundance estimation for thornback ray (Raja clavata) in the central Bay of Biscay

Input data, TMB (C++) and R code for close-kin mark recapture (CKMR) abundance estimation for two subpopulations of thornback ray (Raja clavata) in the central Bay of Biscay (offshore and Gironde estuary, see figure). Samples were taken between 2015 to 2020. Parent-offspring pairs were identified using SNP genotype information. Birth years of individuals were estimated using length information and growth curves by sex.

Simple

Date (Publication)
2021
Date (Revision)
2023-10-25
Other citation details
Trenkel Verena, Charrier Gregory, Lorance Pascal (2021). Data for CKMR abundance estimation for thornback ray (Raja clavata) in the central Bay of Biscay. SEANOE. https://doi.org/10.17882/84524
Credit
Funding: The creation of this SNP data set was funded by the French “Agence Nationale de la Recherche” (ANR) under the GenoPopTaille project (ANR-14-CE02-0006-01), by Fondation Total under the GenopPopTaille-Capsules project and by the European Union's Horizon 2020 research and innovation programme under the grant agreement No. 773713.
Author
  Ifremer, UMR DECOD (Ecosystem Dynamics and Sustainability), Nantes, France - TRENKEL Verena
Author
  Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France - CHARRIER Gregory
Author
  Ifremer, UMR DECOD (Ecosystem Dynamics and Sustainability), Nantes, France - LORANCE Pascal
Publisher
  SEANOE
Theme
  • close-kin mark-recapture
  • abundance estimation
  • thornback ray
  • Fisheries and aquaculture
project
  • H2020 PANDORA (Agreement: 773713)
ODATIS aggregation parameters and Essential Variable names
  • Fish
SeaDataNet Parameter Disciplines
  • Fisheries and aquaculture
Type de jeux de donnée ODATIS
  • Analysis data
Use limitation
CC-BY-NC-SA (Creative Commons - Attribution, No commercial usage, Sharing under the same conditions)
Use constraints
Other restrictions
Date (Publication)
2022
Publisher
  Oxford University Press (OUP)
Author
  TRENKEL VERENA
Author
  CHARRIER GREGORY
Author
  LORANCE PASCAL
Author
  BRAVINGTON MARK V
Unique resource identifier
10.1093/icesjms/fsac002
Association Type
Cross reference
Initiative Type
Study
Date (Publication)
2019
Publisher
  SEANOE
Author
  Le Cam
Author
  Sabrina
Author
  Bidault
Author
  Adeline
Author
  Charrier
Author
  Gregory
Author
  Cornette
Author
  Florence
Author
  Lamy
Author
  Jean-Baptiste
Author
  Lapegue
Author
  Sylvie
Author
  Lorance
Author
  Pascal
Author
  Marandel
Author
  Florianne
Author
  Trenkel
Author
  Verena
Unique resource identifier
10.17882/70546
Association Type
Cross reference
Initiative Type
dataset
Metadata language
English
Topic category
  • Oceans
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Distribution format
  • C++ CODE ( )

  • R CODE ( )

  • TEXTE ( )

  • R DATA OBJECT ( )

OnLine resource
TMB model code (version 2) - 8 KB ( WWW:DOWNLOAD-1.0-link--download )

TMB model code (version 2) - 8 KB

OnLine resource
R code for running model - 2 KB ( WWW:DOWNLOAD-1.0-link--download )

R code for running model - 2 KB

OnLine resource
Description of data fields - 2 KB ( WWW:DOWNLOAD-1.0-link--download )

Description of data fields - 2 KB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Data for Gironde thornback ray - 160 KB

OnLine resource
Processed data ( WWW:DOWNLOAD-1.0-link--download )

Data for offshore thornback ray - 170 KB

OnLine resource
TMB model code (version 1) [RESTRICTED] - 8 KB ( WWW:DOWNLOAD-1.0-link--download )

TMB model code (version 1) [RESTRICTED] - 8 KB

OnLine resource
DOI of the product ( WWW:LINK-1.0-http--metadata-URL )
OnLine resource
Seanoe ( rel-canonical )
Hierarchy level
Dataset
File identifier
seanoe:84524 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2023-10-25
Metadata standard name
ISO 19115:2003/19139
Metadata standard version
1.0
Point of contact
  Ifremer, UMR DECOD (Ecosystem Dynamics and Sustainability), Nantes, France - TRENKEL Verena
 
 

Overviews

overview

Spatial extent

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S
E
W
thumbnail


Keywords

Fisheries and aquaculture abundance estimation close-kin mark-recapture thornback ray
ODATIS aggregation parameters and Essential Variable names
Fish
Type de jeux de donnée ODATIS
Analysis data

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