Bioinformatics
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Successive infections with Vibrio harveyi were conducted in two populations of the European abalone in order to examine which genes may be involved in improved survival to the disease in the St. Malo population.
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Larvae from Pacific oyster, Manila clam, European abalone and great scallop were subjected to two temperatures and two pH over the course of early development. RNAseq data was collected in order to evaluate which genes are modulated in response to stress.
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In order to better characterize the fish biodiversity associated to the presence of cetaceans, especially the common Dolphin, from the Bay of Biscay, sequences from a 16S fragment were obtained from water samples acquired close to groups of dolphins.
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ddRAD genotyping was used to evaluate population connectivity and putative loci under selection in honeycomb worm from 13 sites spanning its distribution in the Atlantic and Mediterranean coasts.
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In European sea bass like in other animals, the tongue plays a fundamental role in the mechanics of food ingestion. It is composed from the surface in depth of mucosa, submucosa, musculature and fibro cartilaginous skeleton. The tunica mucosa exhibits a stratified epithelium interrupted by numerous teeth differently distributed that erupt more or less completely from the layers below. The European sea bass tongue is composed of canine-like teeth, surrounded by taste buds and numerous fungiform and conical papillae. The tongue beeing directly in contact with external environment, the success of the adaptation of fishes to different environments in the context of global change, depends oamong other on the modifications occurring on the tongue structures. The present study investigates the potential effect of ocean acidification on the lingual transcriptome.
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2bRAD genotyping will be used to estimate genetic diversity and connectivity among populations of Sabellaria alveolata. We will relate population genetic parameters with reef state characteristics.
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The project was designed to explore biological rhythms in the hydrothermal vent mussel Bathymodiolus azoricus. The experiment provides the first high-resolution temporal transcriptomes of an hydrothermal species, both in situ and in the laboratory.
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Individuals from 5 populations were kept in common garden conditions in order to examine acclimation and adaptation to temperature in the honeycomb worm. Worms were exposed to 5 temperature treatments, and collected for RNAseq analysis. Gene expression patterns were then examined.
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This dataset consists of metatranscriptomic sequencing reads corresponding to coastal micro-eukaryote communities sampled in Western Europe in 2018 and 2019.
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DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron