NC, NETCDF
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The glider operations in the MOOSE network started to be deployed regularly in 2010 in the North Western Mediterranean Sea, thanks to the setup of national glider facilities at DT-INSU/Ifremer (http://www.dt.insu.cnrs.fr/gliders/gliders.php) and with the support of the European project FP7-PERSEUS. Two endurance lines are operated: MooseT00 (Nice-Calvi; Ligurian Sea) and MooseT02 (Marseille-Menorca; Gulf of Lion). The all dataset here corresponds to raw data in the EGO format.
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This dataset comprises two netcdf files. The first file contains the six global two-dimensional maps necessary to implement the tidal mixing parameterization presented in de Lavergne et al. (2020). Four power fields (E_wwi, E_sho, E_cri and E_hil) represent depth-integrated internal tide energy dissipation, with units of Watts per square meter. Each power field corresponds to a specific dissipative process and associated vertical structure of turbulence production. The two remaining fields, H_cri and H_bot, are decay heights (with units of meters) that enter the vertical structures of the E_cri and E_hil components, respectively. The second file contains three-dimensional fields of turbulence production (with units of Watts per kilogram) obtained by application of the parameterization to the WOCE global hydrographic climatology. The file includes the total turbulence production (epsilon_tid), its four components (epsilon_wwi, epsilon_sho, epsilon_cri, epsilon_hil), and the underlying hydrographic fields, as a function of longitude, latitude and depth. All maps have a horizontal resolution of 0.5º. Detailed documentation of the parameterization can be found in the following publication: de Lavergne, C., Vic, C., Madec, G., Roquet, F., Waterhouse, A.F., Whalen, C.B., Cuypers, Y., Bouruet-Aubertot, P., Ferron, B., Hibiya, T. A parameterization of local and remote tidal mixing. Journal of Advances in Modeling Earth Systems, 12, e2020MS002065 (2020). https://doi.org/10.1029/2020MS002065
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GOSUD aims at assembling in-situ observations of the world ocean surface collected by a variety of ships and at distributing quality controlled datasets. At present time the variables considered by GOSUD are temperature and salinity. The GOSUD data are mostly collected using thermosalinographs (TSG) installed on research vessels, on commercial ships and in some cases on sailing exploration ships GOSUD manages both near-real time data and delayed mode (reprocessed) data.
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This dataset contains (1) outputs of Species Distribution Models (SDMs) for marine fish and (2) estimation of species richness using those outputs. SDMs use correlative algorithms to link presences of species to the environment recorded in place and time of their observation, calculate their environmental niche, estimate the geographical location suitable for them (habitat suitability) and in fine their geographical distribution. Here, we downloaded presences of marine fish from two open source databases, GBIF and OBIS and 13 environmental predictors known to be relevant in fish ecology (list below). We used the CEPHALOPOD pipeline, a framework allowing the user the compute a lot of species at the same time, with comparable methods and a verification of quality of inputs and outputs at every steps (Schickele et al., 2025). 3,642 fish made it to the final step and have the habitat suitability estimated for 12 month + annual mean, 10 bootstrap to quantify uncertainty and x algorithms. Those estimation are available in the “L2_marine_fish_*.nc” files, organized by water column position (bathydemersal, bathypelagic, benthopelagic, demersal, pelagic-neritic, pelagic-oceanic, reef-associated). We then used their annual mean to estimate their actual geographic distribution by applying (1) a bathymetric filtration and (2) a cutting procedure which removes isolated patches of high suitability (i.e., potential distribution) with no recorded presences (i.e., considered to be outside of the species dispersion range). Those geographic distribution were then stacked to estimate global species richness of every fish and each water column position.
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This dataset provides a global Look-Up Table (LUT) of physiological ratios for the real-time adjustment of chlorophyll-a fluorescence measured by biogeochemical Argo (BGC-Argo) profiling floats. The physiological ratios aim to account for the global variability in the relationship between fluorescence and chlorophyll-a concentration, as influenced by phytoplankton physiology. The LUT was developed using two different gap-filled observational Argo-based products (SOCA machine learning-based methodology ; Sauzède et al., 2016; Sauzède et al., 2024). The first product provides gap-filled chlorophyll-a data derived from fluorescence corrected for dark signal and non-photochemical quenching (NPQ) following Schmechtig et al. (2023), while the second product provides chlorophyll-a concentrations derived from light attenuation. The latter is based on the downward irradiance at 490 nm (ED490) derived from the SOCA-light method (Renosh et al., 2023). From this, the diffuse attenuation coefficient (KD490) is computed, which is subsequently used to estimate the chlorophyll-a concentration through the bio-optical relationships described by Morel et al. (2007). These two products, based on fluorescence and radiometry, enable the derivation of spatially varying correction factors, or physiological ratios. These ratios provide a validated grounded framework for adjusting real-time fluorescence observations from OneArgo floats into chlorophyll-a concentrations. The LUT is distributed in NetCDF format and is provided on a regular 1°×1° latitude–longitude grid covering the global ocean. Each grid cell contains the temporal mean, averaged over the water column (from the surface to 1.5 times the euphotic depth), of the physiological ratio. The file also includes metadata describing variable definitions, units, and other relevant information. Variables included: - physiological_ratio — fluorescence-to-radiometry-based chlorophyll correction factor (dimensionless) - physiological_ratio_sd — temporal standard deviation (over the twelve months) of the fluorescence-to-radiometry-based chlorophyll correction factor (dimensionless) - lat, lon — spatial coordinates (degrees north/east) - Global attributes — dataset description, reference citation, and contact information
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This data set contains the gridded hydrographic and transport data for the biennial Go-Ship A25 Greenland–Portugal OVIDE section from 2002 to 2012. The properties and transports are mapped on a 7km x 1m grid. Using a common grid facilitates the comparison between the different occupations of the line and the averaging. This data set was used in Daniault et al. (2016, Progress in Oceanography) to which the reader is referred for a description of the gridding method.
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This dataset provides a World Ocean Atlas of Argo inferred statistics. The primary data are exclusively Argo profiles. The statistics are done using the whole time range covered by the Argo data, starting in July 1997. The atlas is provided with a 0.25° resolution in the horizontal and 63 depths from 0 m to 2,000 m in the vertical. The statistics include means of Conservative Temperature (CT), Absolute Salinity, compensated density, compressiblity factor and vertical isopycnal displacement (VID); standard deviations of CT, VID and the squared Brunt Vaisala frequency; skewness and kurtosis of VID; and Eddy Available Potential Energy (EAPE). The compensated density is the product of the in-situ density times the compressibility factor. It generalizes the virtual density used in Roullet et al. (2014). The compressibility factor is defined so as to remove the dependency with pressure of the in-situ density. The compensated density is used in the computation of the VID and the EAPE.
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This data set provides a monthly time series of the upper limb of the Meridional Overturning Circulation (MOC) intensity at the A25 Greenland-Portugal OVIDE line from 1993 to 2015. The MOC was derived by combining AVISO altimetry with ISAS temperature and salinity data. The reader is referred to Mercier et al. (2015, Progress in Oceanography) for a full description of the method.
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Observations of Sea surface temperature and salinity are now obtained from voluntary sailing ships using medium or small size sensors. They complement the networks installed on research vessels or commercial ships. The delayed mode dataset proposed here is upgraded annually as a contribution to GOSUD (http://www.gosud.org )
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The upper ocean pycnocline (UOP) monthly climatology is based on the ISAS20 ARGO dataset containing Argo and Deep-Argo temperature and salinity profiles on the period 2002-2020. Regardless of the season, the UOP is defined as the shallowest significant stratification peak captured by the method described in Sérazin et al. (2022), whose detection threshold is proportional to the standard deviation of the stratification profile. The three main characteristics of the UOP are provided -- intensity, depth and thickness -- along with hydrographic variables at the upper and lower edges of the pycnocline, the Turner angle and density ratio at the depth of the UOP. A stratification index (SI) that evaluates the amount of buoyancy required to destratify the upper ocean down to a certain depth, is also included. When evaluated at the bottom of the UOP, this gives the upper ocean stratification index (UOSI) as discussed in Sérazin et al. (2022). Three mixed layer depth variables are also included in this dataset, including the one using the classic density threshold of 0.03 kg.m-3, along with the minimum of these MLD variables. Several statistics of the UOP characteristics and the associated quantities are available in 2°×2° bins for each month of the year, whose results were smoothed using a diffusive gaussian filter with a 500 km scale. UOP characteristics are also available for each profile, with all the profiles sorted in one file per month.
Catalogue PIGMA