Benthic Non Native Species Tool (Cefas)

EMODnet Bathymetry has adopted the CDI Data Discovery & Access service as developed and operated by SeaDataNet, the pan-European network of NODCs, to bring together and provide access to available high resolution bathymetric survey data sets from many data providers, such as National Hydrographic Institutes, Research Institutes, and Survey companies. All bathymetric survey data are described with INSPIRE compliant metadata, following the CDI metadata profile, based on ISO 19115 – 19139 standards. This way, the CDI service gives users a highly detailed insight in the availability and geographical spreading of bathymetric survey data sets that are acquired and managed by an increasing group of data providers and for which users can request access for downloading. The CDI metadata are public domain and freely available for all users. However, a major part of the survey data sets is not freely available and requires negotiation with the data owners. The SeaDataNet CDI search, shopping and tracking mechanism facilitates identifying and requesting access to these background data sets from data providers. Note that all data sets are used internally with permission of the data owners for contributing to the EMODnet Digital Terrain Model (DTM) for the European sea regions. The service URL is : https://geo-service.maris.nl/emodnet_bathymetry/wfs?service=WFS&request=GetCapabilities. The layer in the Map Viewer facilitates users to view the locations of the CDI entries and to retrieve details of individual surveys by clicking on the map. From there users are linked to the actual CDI Data Discovery and Access service (https://cdi-bathymetry.seadatanet.org/search) for performing more queries and submitting requests for data access.

EMODnet bathymetry is composed of a multitude of datasets from a multitude of data providers. Users of the resulting grid and associated datasets need to be able to evaluate at the grid node level the quality of the bathymetric data and product they will be using. For this EMODnet Bathymetry has introduced a Quality index (QI). The QI is available as a WFS service providing vector data and as WMS providing the QI as an image service. The aim of the quality index is to: • help data users to evaluate quickly the dataset they are about to request, • indicate to the EMODnet Basin coordinators what are the limitations of the dataset they are about to merge while building the EMODnet DTM and to • be used as the basis of the evaluation of the quality of the EMODnet DTM. Service URL: https://ows.emodnet-bathymetry.eu/wfs

EMODnet bathymetry is composed of a multitude of datasets from a multitude of data providers. Users of the resulting grid and associated datasets need to be able to evaluate at the grid node level the quality of the bathymetric data and product they will be using. For this EMODnet Bathymetry has introduced a Quality index (QI). The QI is available as a WFS service providing vector data and as WMS providing the QI as an image service. The aim of the quality index is to: • help data users to evaluate quickly the dataset they are about to request, • indicate to the EMODnet Basin coordinators what are the limitations of the dataset they are about to merge while building the EMODnet DTM and to • be used as the basis of the evaluation of the quality of the EMODnet DTM. Service URL: https://ows.emodnet-bathymetry.eu/wfs

The Knowledge Network for Biocomplexity (KNB) is an international repository intended to facilitate ecological and environmental research. The KNB was launched in 1998 with a grant from the National Science Foundation (NSF), with the purpose of being the long term home for synthesis datasets and research products generated by National Center for Ecological Analysis and Synthesis (NCEAS) working groups. Since then, NCEAS has continued to operate the KNB not only as an archive for NCEAS working group products, but also for the broader ecology and environmental science community. The KNB acceps all environmental or ecological related data and publishes datasets with Digital Object Identifiers for the express purpose of ensuring long-term access to these datasets. We strive to abide by FAIR (findable, accessible, interoperable, resuble) principles of data sharing and preservation. For scientists, the KNB is an efficient way to share, discover, access and interpret complex ecological data. Due to rich contextual information provided with KNB data, scientists are able to integrate and analyze data with less effort. The data originate from a highly-distributed set of field stations, laboratories, research sites, and individual researchers. The foundation of the KNB is the rich, detailed metadata provided by researchers that collect data, which promotes both automated and manual integration of data into new projects.

rgbif is an R package from rOpenSci that allows searching and retrieving data from GBIF. rgbif wraps R code around the GBIF API to allow you to talk to GBIF from R and access metadata, species names, and occurrences. rgbif allows you to easily: - get data for single occurrences - retrieve multiple occurences - search for taxon names - generate maps of occurences

The ODIS "Catalogue of Sources" aims to be an online browsable and searchable catalogue of existing ocean related web-based sources/systems of data and information as well as products and services. It will also provide information on products and visualize the landscape (entities and their connections) of ocean data and information sources. It will contribute to the objectives of the Agenda 2030, and in particular the UN Decade for Ocean Science for Sustainable Development. The Catalogue is not an ocean database or metadata repository. The catalogue includes descriptive information such as the URL, title, description, language, point of contact, geographic scope, available technologies for machine-to-machine interaction, keywords, etc. and can be searched on many of these fields. The IODE network of NODCs has been collecting, managing and serving data for decades. This effort has yielded an extensive, but distributed and heterogeneous collection of data and information sources. Additionally, the low threshold for technical capabilities required to offer data and information over the Internet means that many of the hosted resources are not readily discoverable through NODCs, regional or international data and information systems ODIS will provide an online catalogue of (ideally) all online data/information sources (and, where possible, metadata on off-line sources as well). Many regional and international programmes and projects have developed online data/information services but there is currently no "one-stop shop" where users are offered an overview and/or common data/information discovery interface. There are currently 3090 sources (2172 are searchable) catalogued in the system.

The Western Channel Observatory (WCO) is an oceanographic time-series and marine biodiversity reference site in the Western English Channel. In situ measurements are undertaken weekly at coastal station L4 and fortnightly at open shelf station E1 using the research vessels of the Plymouth Marine Laboratory and the Marine Biological Association. These measurements are complemented by PML's recognised excellence in ecosystem modelling and satellite remote sensing science. By integrating these different observational disciplines we can begin to disentangle the complexity of the marine ecosystem. The WCO measures several key parameters important to the functioning of the marine ecosystem such as light, temperature, salinity and nutrients. Station L4 has some of the longest time-series in the world for zooplankton and phytoplankton, and fish trawls have been made by the MBA for a century. Station E1 has a hydrographic series dating from 1903. These long series are complemented by hourly measurements made at our moorings situated at both stations. These can elucidate changes not captured by the routine weekly sampling.

The Marine Environmental Data and Information Network (MEDIN) is a partnership of UK organisations committed to improving access to UK marine data. MEDIN is open to all with an interest in marine data and information. We are sponsored by a consortium of 15 sponsors and partnered with over 50 organisations. MEDIN Sponsors include a range of UK marine organisations who support MEDIN’s principles and lead the UK in marine data management. To officially join the network and become a MEDIN Sponsor, please email MEDIN stating your interest at enquiries@medin.org.uk. Our partners represent government departments and agencies, research organisations and private companies and have committed to practise good data management to help future-proof and secure UK’s valuable marine data. MEDIN reports to the Marine Science Coordination Committee. The MEDIN portal contains information about 15,000 marine datasets. The United Kingdom Directory of Marine Observing Systems (UKDMOS), is a unique internet-based searchable database of marine monitoring conducted by UK organisations. Aiming to fulfil the basic requirement to know where, when and what is being monitored in the marine environment around the UK and provide information to help coordinate monitoring across different organisations, UKDMOS is a tool for searching monitoring programmes and series based on information such as the parameters measured or the frequency of measurements taken. UKDMOS is managed and updated by the Marine Environmental Data and Information Network (MEDIN).

SpiArcBase is a software developed for the treatment of Sediment Profile images (SPIs). Sediment Profile Images (SPIs) are widely used for benthic ecological quality assessment under various environmental stressors. The processing of the information contained in SPIs is slow and its interpretation is largely operator dependent. SpiArcBase enhances the objectivity of the information extracted from SPIs, especially for the assessment of the apparent Redox Potential Discontinuity (aRPD). This software allows the user to create and manage a database containing original SPIs and corresponding derived pieces of information. Once you have downloaded it, you can ask for help and stablish a helpdesk.