/Biological Environment/Bioinformatics
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This study aims to compare different metabarcoding sequences of commercially fished shrimps collected by tree counties on the North Brazil Shelf Large Marine Ecosystem
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160 whole genomes sequences obtained from 160 individual fish samples representing about 100 different species present in Gulf of Lion, and bay of Biscay.
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Here, our study aimed to first assess the influence of plastic on the bacterial community belonging to water, plastic and the microbiome of the giant clam and on the organism's physiology of this putative sentinel species. Our second objective was to identify bacteria whose abundance varies significantly with plastic concentration. Overall, this study will fill the gap towards a better understanding of the impact of plastic pollution on bacterial community assemblages in both inert and living environments.
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ddRAD genotyping was used to evaluate population connectivity and putative loci under selection in honeycomb worm from 13 sites spanning its distribution in the Atlantic and Mediterranean coasts.
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Whole genome pooled sequencing of individuals from 4 populations and 3 different color phenotype in order to uncover the genetic variants linked to color expression in the pearl oyster P. margaritifera.
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Individuals from 5 populations were kept in common garden conditions in order to examine acclimation and adaptation to temperature in the honeycomb worm. Worms were exposed to 5 temperature treatments, and collected for RNAseq analysis. Gene expression patterns were then examined.
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2bRAD genotyping will be used to estimate genetic diversity and connectivity among populations of Sabellaria alveolata. We will relate population genetic parameters with reef state characteristics.
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The present data set concerne metabarcoding raw reads produced using 4 different PCR targeting polymerase or capside coding region of the genoyupe I and II of norovirus. Test samples of norovirus with serial dilutions in pure water and after a bio-accumulation in oysters. Sequencing was made after VirCapSeq-VERT approach.
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Larvae from Pacific oyster, Manila clam, European abalone and great scallop were subjected to two temperatures and two pH over the course of early development. RNAseq data was collected in order to evaluate which genes are modulated in response to stress.
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DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron