This study aims to compare different metabarcoding sequences of commercially fished shrimps collected by tree counties on the North Brazil Shelf Large Marine Ecosystem

WGS for Iatlantic projet ( ) for assessing past and present connectivity

Genetic diversity is often considered a key factor in a species’ ability to adapt to environmental changes and our aim was to understand the biological, ecological, and biogeographic factors that explain differences in genetic diversity among marine fish. Therefore, whole genomes of 160 individual marine fish were sequenced to a minimum depth of 15×, enabling near-complete representation of each diploid genome.

The eleven collected wild strains of T. lutea were compared phenotypically, in particular with regard to their pigment and lipid profiles. The genome of each T. lutea strain was also sequenced to investigate the genetic structure and genome organisation of this species. Collected data were summarized in a genome browser to provide easy-to-use support for the scientific community (https://genomes-catalog.ifremer.fr). This provides an important resource- to understand, exploit and predict the biodiversity of this species.

Raw reads for the assembly of Gambusia holbrooki genome.

Sequenced samples are city center wastewater sampled by passive samplers. Variants are identified by Illumina Miseq sequencing.

Dart Seq data gathered on Blue Shark in the framework of the PSTBS-IO project supported by funding from FAO, CSIRO Oceans and Atmosphere, AZTI Tecnalia, Institut de recherche pour le développement (IRD), and Research Institute for Tuna Fisheries (RITF) and financial assistance of the European Union (GCP/INT/233/EC – Population structure of IOTC species in the Indian Ocean), and POPSIZE project supported by FEAMP (2014-2020 UE N°508/2014), and Institut français de recherche pour l'Exploitation de la mer (Ifremer).

WGS of SARS-CoV-2 by Oxford Nanopore Technology from raw wastewater samples collected in France, 2020-2021

Vibrio bacteria sampled from juvenile oysters and seawater collected in Thau Lagoon (Languedoc-Roussillon, France) in October 2015 during a mortality event were genotyped using hsp60, rctB, topA and mreB protein-coding genes

The present data set concerne metabarcoding raw reads produced using 4 different PCR targeting polymerase or capside coding region of the genoyupe I and II of norovirus. Test samples of norovirus with serial dilutions in pure water and after a bio-accumulation in oysters. Sequencing was made after VirCapSeq-VERT approach.