/Biological Environment/Bioinformatics
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The eleven collected wild strains of T. lutea were compared phenotypically, in particular with regard to their pigment and lipid profiles. The genome of each T. lutea strain was also sequenced to investigate the genetic structure and genome organisation of this species. Collected data were summarized in a genome browser to provide easy-to-use support for the scientific community (https://genomes-catalog.ifremer.fr). This provides an important resource- to understand, exploit and predict the biodiversity of this species.
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160 whole genomes sequences obtained from 160 individual fish samples representing about 100 different species present in Gulf of Lion, and bay of Biscay.
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This study aims to compare different metabarcoding sequences of commercially fished shrimps collected by tree counties on the North Brazil Shelf Large Marine Ecosystem
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DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron
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This dataset concerns sequences from the metabarcoding analysis (bacteria & archaea) of 4 hydrothermal sites from the TAG field (2 inactive sites & 2 weakly active sites) collected during the HERMINE2 oceanographic campaign.
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Whole genome pooled sequencing of individuals from 4 populations and 3 different color phenotype in order to uncover the genetic variants linked to color expression in the pearl oyster P. margaritifera.
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Larvae from Pacific oyster, Manila clam, European abalone and great scallop were subjected to two temperatures and two pH over the course of early development. RNAseq data was collected in order to evaluate which genes are modulated in response to stress.
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Metabolome of of the marine diatom Haslea ostrearia. Bacteria were isolated from Haslea ostrearia isolates cultivated in ES 1/3 medium in laboratory conditions over a 3-month period. These microalgal isolates were recovered from four sites on the French Atlantic coast: Bouin , La Barre-de-Monts (46.90 N; 2.11°W), Isle de Ré (46.22 N; 1.45°W), and La Tremblade (45.80 N; 1.15°W) . Data processing and statistical analysis of the metabolic profiles were performed on an LC/MS Metabolomics Discovery Workflow using Mass Profiler Professional Software and an Agilent 1290 Infinity II LC system coupled to an Agilent 6540 UHD Accurate-Mass QTOF hybrid mass spectrometer (Agilent Technologies, Waldbronn, Germany) equipped with a dual electrospray ionization (ESI) source. The full history (tools, parameters, input and output data files) is publicly available on http://dx.doi.org/10.12770/046e1e6a-864e-48a6-944b-d8613d67de0f
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This dataset contains libraries of 3 coral species: Acropora hyacinthus, Porites lobata and Poscillopora acuta. In three islands with contrasting thermal regimes, the three species were sampled and brought back to the laboratory to induce an experimental thermal stress. The different colonies were split into two conditions. One part was placed in tanks filled with seawater at a given control temperature, the other part in tanks where the water temperature was increased. The samples in this dataset correspond to part of the control condition samples from French Polynesia and New Caledonia.
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In order to better characterize the genetic diversity of Cetaceans and especially the common Dolphin from the Bay of Biscay, sequences from the variable mitochondrial control region were obtained from water samples acquired close to groups of dolphins.
Catalogue PIGMA