scRNA-seq reads from a Pacific oyster (Crassostrea gigas) hemocyte preparation. Hemocytes were isolated from a unique immunologically naive animal (Ifremer Standardized Animal, 18 months) and single-cell drop-seq technology was applied to 3,000 individual hemocytes.

Ce document se décompose en deux parties: La première énonce les valeurs et fonctions du massif forestier communes à tous les acteurs concernés par son avenir. La seconde présente les pressions et les enjeux qui pèsent sur le massif forestier des Landes de Gascogne.

The dataset presents the results of classification of eutrophication status of the European seas using the HEAT+ tool. Eutrophication status is evaluated in five classes, where NPAhigh and NPAgood are recognised as ‘non-problem areas’ and PAmoderate, PApoor and PAbad are recognised as ‘problem areas’. Besides the overall Eutrophication status (HEAT+) are the results shown for three aspects of eutrophication: C1) Nutrient Concentrations C2) Direct Effects C3) Indirect Effects This dataset underpins the findings and cartographic representations published in the report "Nutrient enrichment and eutrophication in Europe's seas" (EEA, 2019): https://www.eea.europa.eu/publications/nutrient-enrichment-and-eutrophication-in.

This dataset presents the resulting assessment grid (based on the EEA reference grid) with the classification of chemical status of the transitional, coastal and marine waters in the context of the Water Framework Directive (WFD) and the Marine Strategy Framework Directive (MSFD). This classification has been performed using the CHASE+ tool, with classifications of the matrices ‘water’, ‘sediment’ and ‘biota’ and indicators of ‘biological effects’, as well as an integrated classification of chemical status, combining results of all matrices. The chemical status is evaluated in five classes, where NPAhigh and NPAgood are recognised as ‘non-problem areas’ and PAmoderate, PApoor and PAbad are recognised as ‘problem areas’. The overall area of interest used is based on the marine regions and subregions under the Marine Strategy Framework Directive. Additionally, Norwegian (Barent Sea and Norwegian Sea) and Icelandic waters (’Iceland Sea’) have been added (see Surrounding seas of Europe). Note that within the North East Atlantic region only the subregions within EEZ boundaries (~200 nm) have been included. This dataset underpins the findings and cartographic representations published in the report "Contaminants in Europe's Seas" (EEA, 2019): https://www.eea.europa.eu/publications/contaminants-in-europes-seas.

Process-driven seafloor habitat sensitivity (PDS) has been defined from the method developed by Kostylev and Hannah (2007), which takes into account physical disturbances and food availability as structuring factors for benthic communities. It is a conceptual model, relating species’ life history traits to environmental properties. Physical environment maps have been converted into a map of benthic habitat types, each supporting species communities with specific sensitivity to human pressures. It is based on two axes of selected environmental forces. The "Disturbance" (Dist) axis reflects the magnitude of change (destruction) of habitats (i.e. the stability through time of habitats), only due to natural processes influencing the seabed and which are responsible for the selection of life history traits. The "Scope for Growth" (SfG) axis takes into account environmental stresses inducing a physiological cost to organisms and limiting their growth and reproduction potential. This axis estimates the remaining energy available for growth and reproduction of a species (the energy spent on adapting itself to the environment being already taken into account). It can be related to the metabolic theory of the ecology. The process-driven sensitivity (PDS) can be seen as a risk map that combines the two previous axes and reflects the main ecological characteristics of the benthic habitats regarding natural processes. Areas with low disturbance are areas with a naturally low reworking of the sediment, allowing the establishment of a rich sessile epifauna community, with K-strategy species. Areas with low SfG means that the environmental factors, even though there are not limiting, are in lower values, i.e. that it imposes a cost for species to live. In areas combining low disturbance and low SfG, big suspension-feeder species with long life and slow growth can often be found: these species are more vulnerable in case of added disturbance.

Process-driven seafloor habitat sensitivity (PDS) has been defined from the method developed by Kostylev and Hannah (2007), which takes into account physical disturbances and food availability as structuring factors for benthic communities. It is a conceptual model, relating species’ life history traits to environmental properties. Physical environment maps have been converted into a map of benthic habitat types, each supporting species communities with specific sensitivity to human pressures. It is based on two axes of selected environmental forces. The "Disturbance" (Dist) axis reflects the magnitude of change (destruction) of habitats (i.e. the stability through time of habitats), only due to natural processes influencing the seabed and which are responsible for the selection of life history traits. The "Scope for Growth" (SfG) axis takes into account environmental stresses inducing a physiological cost to organisms and limiting their growth and reproduction potential. This axis estimates the remaining energy available for growth and reproduction of a species (the energy spent on adapting itself to the environment being already taken into account). It can be related to the metabolic theory of the ecology. The process-driven sensitivity (PDS) can be seen as a risk map that combines the two previous axes and reflects the main ecological characteristics of the benthic habitats regarding natural processes. Areas with low disturbance are areas with a naturally low reworking of the sediment, allowing the establishment of a rich sessile epifauna community, with K-strategy species. Areas with low SfG means that the environmental factors, even though there are not limiting, are in lower values, i.e. that it imposes a cost for species to live. In areas combining low disturbance and low SfG, big suspension-feeder species with long life and slow growth can often be found: these species are more vulnerable in case of added disturbance.

Ce projet s’attache à étudier les phénomènes Natech imputables à des inondations/tsunami en considérant deux échelles spatiales d’analyse : l’échelle du site industriel et l’échelle du territoire. Ces deux échelles permettent d’appréhender la problématique des Natechs d’une part d’un point de vue essentiellement « vulnérabilité » et d’autre part, grâce à une analyse plus globale et profonde qui fait résonner la notion de résilience territoriale. Le travail est basé sur une analyse a posteriori (au Japon) et a priori (en France) des pratiques de gestion des événements Natech auprès des parties prenantes (industriels, collectivités, services de l’état…). Pour cela, en France et au Japon, des questionnaires, des visites et des entretiens ont été réalisés sur des territoires touchés ou potentiellement concernés par le phénomène Natech inondation/tsunami. Ces données sont employées : -à l’échelle du site industriel, pour modéliser l’impact du phénomène naturel sur l’installation (par le biais notamment d’arbres de défaillances), puis produire deux outils d’aide à la décision (diagnostic de l’Etude de danger et diagnostic du Plan d’Opération Interne lors d’un événement Natech inondation) -à l’échelle du territoire pour modéliser le processus Natech, identifier 3 zones de fragilité, définir 5 scénarios de choc. Puis, en considérant que la résilience globale d’un territoire dépend notamment de la résilience des acteurs qui le constituent proposer un outil d’audit des parties prenantes du territoire afin d’estimer la résilience de chacun d’entre eux, les pistes de progrès et, in fine, améliorer la résilience du territoire qui les héberge. Mots-clefs : Natech, Science du danger, arbres de défaillance, aide à la décision, résilience territoriale.

Shom is the national referent for the level of the sea in situ on all areas under French jurisdiction. In this capacity, he assures under the acronym REFMAR different coordination functions in the collection and dissemination of public data related to water level observations, in order to promote their use in multiple applications within the framework of international recommendations.

In European sea bass like in other animals, the tongue plays a fundamental role in the mechanics of food ingestion. It is composed from the surface in depth of mucosa, submucosa, musculature and fibro cartilaginous skeleton. The tunica mucosa exhibits a stratified epithelium interrupted by numerous teeth differently distributed that erupt more or less completely from the layers below. The European sea bass tongue is composed of canine-like teeth, surrounded by taste buds and numerous fungiform and conical papillae. The tongue beeing directly in contact with external environment, the success of the adaptation of fishes to different environments in the context of global change, depends oamong other on the modifications occurring on the tongue structures. The present study investigates the potential effect of ocean acidification on the lingual transcriptome.

The eleven collected wild strains of T. lutea were compared phenotypically, in particular with regard to their pigment and lipid profiles. The genome of each T. lutea strain was also sequenced to investigate the genetic structure and genome organisation of this species. Collected data were summarized in a genome browser to provide easy-to-use support for the scientific community (https://genomes-catalog.ifremer.fr). This provides an important resource- to understand, exploit and predict the biodiversity of this species.