Comparison between 3 kits, Roche, Twist Biosciences and Illumina on the ability to enrich environmental samples to viral sequences

Surface current data measured by the CNR-ISMAR HF radar network are made available in graphical format for the last 48 hours and in real time and delayed mode via a THREDDS catalog which provides metadata and data access. The web site gives information on HF radar technology, sites position and operational parameters, and links to the THREDDS catalog. The catalog offers different remote-data-access protocols such as Open-source Project for a Network Data Access Protocol (OpenDaP), Web Coverage Service (WCS), Web Map Service (WMS) (OGS standards), as well as pure HTTP or NetCDF-Subsetter. They allow for metadata interrogation and data download (even sub-setting the dataset in terms of time and space) while embedded clients, such as GODIVA2, NetCDF-JavaToolsUI and Integrated Data Viewer, grant real-time data visualization directly via browser and allow for navigating within the plotted maps, saving images, exporting-importing on Google Earth, generating animations in selected time intervals. The data on the THREDDS catalog are organized in two folders, collecting the hourly current files of the last five days and grouping all the historical data. The two folders are accessible both in aggregated and in non-aggregated configuration. The data set consists of maps of radial and total velocity of the sea water surface current collected by the HF radars within the Italian Coastal Radar Network established in the framework of the Italian flagship project RITMARE. Surface ocean velocities estimated by HF Radar are representative of the upper 0.3-2.5 meters of the ocean. The radar sites are operated according to Quality Assessment procedures and data are processed for Quality Control. Data access tools are compliant to Open Geospatial Consortium (OGC), Climate and Forecast (CF) convention and INSPIRE directive. The use of netCDF format allows an easy implementation of all the open source services developed by UNIDATA.

Web Map Service for Emodnet Chemistry

Species distribution models (Random Forest) predicting the distribution of mixed cold-water coral community (Coral Garden) assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.

The Ocean Data Viewer offers users the opportunity to view and download a range of spatial datasets that are useful for informing decisions regarding the conservation of marine and coastal biodiversity. These decisions ultimately affect the ocean's health and productivity, which provide the ecosystem services that are necessary for our well-being, livelihoods, and survival. To date, the users of this tool have included government agencies, scientists, researchers, the corporate sector, and non-governmental organisations. These data come from internationally respected scientific institutions and other organisations that have agreed to make their data available to the global community, with the hope that these data will support and encourage informed decision-making that sustains global biodiversity and ecosystem services. The Ocean Data Viewer is primarily a mechanism to view and download data, and is not intended to be used for analysis or to query data.

The “World Seabed Sediment Map” product contains geo-referenced digital data, describing the nature of the sediment encountered in different seas and oceans of the world. The objects are all surface areas and the description of an object includes in particular the nature of the sediment including rock-type bottoms.

This map presents all layers corresponding to "Sea and coastal passenger water transport" activities in the Atlantic area. For more information about this NACE code : https://ec.europa.eu/eurostat/ramon/nomenclatures/index.cfm?TargetUrl=DSP_NOM_DTL_VIEW&StrNom=NACE_REV2&StrLanguageCode=EN&IntPcKey=18512804&IntKey=18512834&StrLayoutCode=HIERARCHIC&IntCurrentPage=1 Indicators collected are : Business indicators per country Number of persons employed and number of employees in full time equivalent units per NUTS 3 unit of the Atlantic Area Overall passenger traffic per main Atlantic port

Classification of the Atlantic Ocean seabed into broad-scale benthic habitats employing a hierarchical top-down clustering approach aimed at informing Marine Spatial Planning. This work was performed at the University of Plymouth in 2021 with data provided by a wide group of partners representing the nations surrounding the Atlantic Ocean. It classifies continuous environmental data into discrete classes that can be compared to observed biogeographical patterns at various scales. It has 3 levels of classification. For ease of use, a layer is provided for each level. Level 1 has 4 classes. Level 2 has 15 classes nested within level 1. Layers indices are 2 digits (1[level1 class index]1[level 2 class index]). Level 3 has 157 classes nested within level 2 and class names have 4 digits (1digit[level1 class index]1[level 2 class index]2[level 3 class index]). Note that the classification was performed for the whole world and thus it has more classes than in the presented layer.

Classification of the seabed in the Atlantic Ocean into broad-scale benthic habitats employing a non-hierarchical top-down clustering approach aimed at informing Marine Spatial Planning. This work was performed at the University of Plymouth in 2021 with data provided by a wide group of partners representing the nations surrounding the Atlantic Ocean. It classifies continuous environmental data into discrete classes that can be compared to observed biogeographical patterns at various scales. It has 3 levels of classification. The numbers in the raster layer correspond to individual classes. Description of these classes is given in McQuaid, K.A. et al. (2023).

"'Short description:''' The High-Resolution Ocean Colour (HR-OC) Consortium (Brockmann Consult, Royal Belgian Institute of Natural Sciences, Flemish Institute for Technological Research) distributes Level 4 (L4) Turbidity (TUR, expressed in FNU), Solid Particulate Matter Concentration (SPM, expressed in mg/l), particulate backscattering at 443nm (BBP443, expressed in m-1) and chlorophyll-a concentration (CHL, expressed in µg/l) for the Sentinel 2/MSI sensor at 100m resolution for a 20km coastal zone. The products are delivered on a geographic lat-lon grid (EPSG:4326). BBP443, constitute the category of the 'optics' products. The BBP443 product is generated from the L3 RRS products using a quasi-analytical algorithm (Lee et al. 2002). he 'tur_tsm_chl' products include TUR, SPM and CHL. They are retrieved through the application of automated switching algorithms to the RRS spectra adapted to varying water conditions (Novoa et al. 2017). The GEOPHYSICAL product consists of the Chlorophyll-a concentration (CHL) retrieved via a multi-algorithm approach with optimized quality flagging (O'Reilly et al. 2019, Gons et al. 2005, Lavigne et al. 2021). Monthly products (P1M) are temporal aggregates of the daily L3 products. Daily products contain gaps in cloudy areas and where there is no overpass at the respective day. Aggregation collects the non-cloudy (and non-frozen) contributions to each pixel. Contributions are averaged per variable. While this does not guarantee data availability in all pixels in case of persistent clouds, it provides a more complete product compared to the sparsely filled daily products. The Monthly L4 products (P1M) are generally provided withing 4 days after the last acquisition date of the month. Daily gap filled L4 products (P1D) are generated using the DINEOF (Data Interpolating Empirical Orthogonal Functions) approach which reconstructs missing data in geophysical datasets by using a truncated Empirical Orthogonal Functions (EOF) basis in an iterative approach. DINEOF reconstructs missing data in a geophysical dataset by extracting the main patterns of temporal and spatial variability from the data. While originally designed for low resolution data products, recent research has resulted in the optimization of DINEOF to handle high resolution data provided by Sentinel-2 MSI, including cloud shadow detection (Alvera-Azcárate et al., 2021). These types of L4 products are generated and delivered one month after the respective period. '''Processing information:''' The HR-OC processing system is deployed on Creodias where Sentinel 2/MSI L1C data are available. The production control element is being hosted within the infrastructure of Brockmann Consult. The processing chain consists of: * Resampling to 60m and mosaic generation of the set of Sentinel-2 MSI L1C granules of a single overpass that cover a single UTM zone. * Application of a glint correction taking into account the detector viewing angles * Application of a coastal mask with 20km water + 20km land. The result is a L1C mosaic tile with data just in the coastal area optimized for compression. * Level 2 processing with pixel identification (IdePix), atmospheric correction (C2RCC and ACOLITE or iCOR), in-water processing and merging (HR-OC L2W processor). The result is a 60m product with the same extent as the L1C mosaic, with variables for optics, transparency, and geophysics, and with data filled in the water part of the coastal area. * invalid pixel identification takes into account corrupted (L1) pixels, clouds, cloud shadow, glint, dry-fallen intertidal flats, coastal mixed-pixels, sea ice, melting ice, floating vegetation, non-water objects, and bottom reflection. * Daily L3 aggregation merges all Level 2 mosaics of a day intersecting with a target tile. All valid water pixels are included in the 20km coastal stripes; all other values are set to NaN. There may be more than a single overpass a day, in particular in the northern regions. This step comprises resampling to the 100m target grid. * Monthly L4 aggregation combines all Level 3 products of a month and a single tile. The output is a set of 3 NetCDF datasets for (1) optics and (2) turbidity, suspended matter and chlorophyll concentration, respectively for the month. * Gap filling combines all daily products of a period and generates (partially) gap-filled daily products again. The output of gap filling are 2 datasets for (1) optics (BBP443 only) and (2) turbidity, suspended mattr and chlorophyll concentration per day. '''Description of observation methods/instruments:''' Ocean colour technique exploits the emerging electromagnetic radiation from the sea surface in different wavelengths. The spectral variability of this signal defines the so-called ocean colour which is affected by the presence of phytoplankton. '''Quality / Accuracy / Calibration information:''' A detailed description of the calibration and validation activities performed over this product can be found on the CMEMS web portal and in CMEMS-BGP_HR-QUID-009-201_to_212. '''Suitability, Expected type of users / uses:''' This product is meant for use for educational purposes and for the managing of the marine safety, marine resources, marine and coastal environment and for climate and seasonal studies. '''Dataset names: ''' *cmems_obs_oc_med_bgc_tur_spm_chl_nrt_l4-hr-mosaic_P1M-v01 *cmems_obs_oc_med_bgc_optics_nrt_l4-hr-mosaic_P1M-v01 *cmems_obs_oc_med_bgc_tur_spm_chl_nrt_l4-hr-mosaic_P1D-v01 *cmems_obs_oc_med_bgc_optics_nrt_l4-hr-mosaic_P1D-v01 '''Files format:''' *netCDF-4, CF-1.7 *INSPIRE compliant." '''DOI (product) :''' https://doi.org/10.48670/moi-00110