'''DEFINITION''' The indicator of Volume Transport Anomaly in Selected Vertical Sections in the Iberia–Biscay–Ireland (IBI) region (OMI_CIRCULATION_VOLTRANS_IBI_section_integrated_anomalies) is defined as the time series of annual mean volume transport calculated across a set of vertical ocean sections. These sections have been selected to represent the temporal variability of key ocean currents within the IBI domain. The monitored ocean currents include the transport towards the North Sea through the Rockall Trough (RTE) (Holliday et al., 2008; Lozier and Stewart, 2008), the Canary Current (CC) (Knoll et al., 2002; Mason et al., 2011), the Azores Current (AC) (Mason et al., 2011), the Algerian Current (ALG) (Tintoré et al., 1988; Benzohra and Millot, 1995; Font et al., 1998), and the net transport along the 48° N latitude parallel (N48) (see OMI figure). To produce ensemble-based results, six datasets provided by the Copernicus Marine Service have been used: * '''IBI-REA''' & '''IBI-INT''': IBI_MULTIYEAR_PHY_005_002 (reanalysis and interim datasets) * '''GLO-REA''': GLOBAL_MULTIYEAR_PHY_001_030 (reanalysis) * '''ARMOR''': MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012 (reprocessed observations) * '''MED-REA''': MEDSEA_MULTIYEAR_PHY_006_004 (reanalysis) * '''NWS-REA''': NWSHELF_MULTIYEAR_PHY_004_009 (reanalysis) The time series displays the ensemble mean (blue line), the ensemble spread (grey shaded area), and the mean transport with reversed sign (red dashed line), which indicates the threshold of anomaly values corresponding to a reversal in the direction of the current transport. In addition, the trend analysis at the 95% confidence level is shown in the bottom-right corner of each diagram. Further details on the product are provided in the corresponding Product User Manual (de Pascual-Collar et al., 2026a) and Quality Information Document (de Pascual-Collar et al., 2026b), as well as in de Pascual-Collar et al., 2024. '''CONTEXT''' The IBI area is a highly complex region characterized by a remarkable variety of ocean currents. Among them, we can highlight those that originate as a result of the closure of the North Atlantic Drift (Mason et al., 2011; Holliday et al., 2008; Peliz et al., 2007; Bower et al., 2002; Knoll et al., 2002; Pérez et al., 2001; Jia, 2000); the subsurface currents flowing northward along the continental slope (de Pascual-Collar et al., 2019; Pascual et al., 2018; Machín et al., 2010; Fricourt et al., 2007; Knoll et al., 2002; Mazé et al., 1997; White & Bowyer, 1997); and the exchange currents occurring in the Strait of Gibraltar and the Alboran Sea (Sotillo et al., 2016; Font et al., 1998; Benzohra & Millot, 1995; Tintoré et al., 1988). The variability of ocean currents in the IBI domain is relevant to the global thermohaline circulation and other climatic and environmental processes. For example, as discussed by Fasullo and Trenberth (2008), subtropical gyres play a crucial role in the meridional energy balance. The poleward salt transport of Mediterranean water, driven by subsurface slope currents, has significant implications for salinity anomalies in the Rockall Trough and the Nordic Seas, as studied by Holliday (2003), Holliday et al. (2008), and Bozec et al. (2011). The Algerian Current serves as the only pathway for Atlantic Water to reach the Western Mediterranean. '''CMEMS KEY FINDINGS''' The volume transport time series reveal periods during which the monitored currents exhibited notably high or low variability. Specifically, the RTE current shows pronounced variability in 2010 and during 2014–2015; the N48 section between 2012 and 2014; the ALG current in 2006 and 2017; the AC current between 2005–2007 and in 2021; and the CC current between 2005–2007. Furthermore, certain periods display anomalies of sufficient magnitude (in absolute value) to indicate a reversal in the net transport direction of the current. This is the case for the ALG current in 2017 and 2024 (with net transport towards the west), and for the CC current in 2010 (with net transport towards the north). Trend analysis over the period 1993–2023 does not reveal any statistically significant trends for the monitored currents. However, the confidence interval for the trend in the ALG section is close to rejecting the null hypothesis of no trend. '''DOI (product):''' https://doi.org/10.48670/mds-00351

The European Union’s Copernicus-funded TRUSTED project (Towards Fiducial Reference Measurements of Sea-Surface Temperature by European Drifters) has deployed over 100 state of the art drifting buoys for improved validation of Sea Surface Temperature (SST) from the Sentinel-3 Sea and Land Surface Temperature Radiometers (SLSTR). These buoys are manufactured by NKE. The TRUSTED drifting buoys data and metadata are distributed in qualtity control NetCDF files, as a subset of DBCP drifting buoys GDAC (Global Data Assembly Centre). Coriolis DAC  (Data Assembly Centre) routinely collects, decodes, quality controls, preserves and distributes data and metadata as NetCDF-CF files. The TRUSTED buoys have specific features managed by Coriolis DAC python data processing chain: a high resolution temperature sensor in addition to the classic drifting buoy temperature sensor. The high sampling and high resolution observations are distributed in specific variables TEMP_HR, TEMP_HR_SPOT, TEMP_HR_XX (XX is the percentile sample).  

Donnees publiques de la Directive Cadre Strategie pour le Milieu Marin (DCSMM)

Plankton was sampled with a Continuous Underway Fish Egg Sampler (CUFES, 315µm mesh size) at 4 m below the surface, and a WP2 net (200µm mesh size) from 100m to the surface, or 5 m above the sea floor to the surface when the depth was < 100 m, in the Bay of Biscay. The full images were processed with the ZooCAM software and the embedded Matrox Imaging Library (Colas et a., 2018) which generated regions of interest (ROIs) around each individual object and a set of features measured on the object. The same objects were re-processed to compute features with the scikit-image library http://scikit-image.org. The 1, 286, 590 resulting objects were sorted by a limited number of operators, following a common taxonomic guide, into 93 taxa, using the web application EcoTaxa http://ecotaxa.obs-vlfr.fr. For the purpose of training machine learning classifiers, the images in each class were split into training, validation, and test sets, with proportions 70%, 15% and 15%. The archive contains : taxa.csv.gz Table of the classification of each object in the dataset, with columns : - objid : unique object identifier in EcoTaxa (integer number). - taxon_level1 : taxonomic name corresponding to the level 1 classification - lineage_level1 : taxonomic lineage corresponding to the level 1 classification - taxon_level2 : name of the taxon corresponding to the level 2 classification  - plankton : if the object is a plankton or not (boolean) - set : class of the image corresponding to the taxon (train : training, val : validation, or test) - img_path : local path of the image corresponding to the taxon (of level 1), named according to the object id features_native.csv.gz Table of morphological features computed by ZooCAM. All features are computed on the object only, not the background. All area/length measures are in pixels. All grey levels are in encoded in 8 bits (0=black, 255=white). With columns : - area : object's surface - area_exc : object surface excluding white pixels - area_based_diameter : object's Area Based Diameter: 2 * (object_area/pi)^(1/2) - meangreyobjet : mean image grey level - modegreyobjet : modal object grey level - sigmagrey : object grey level standard deviation - mingrey : minimum object grey level - maxgrey : maximum object grey level - sumgrey : object grey level integrated density: object_mean*object_area - breadth : breadth of the object along the best fitting ellipsoid minor axis - length : breadth of the object along the best fitting ellipsoid majorr axis - elongation : elongation index: object_length/object_breadth - perim : object's perimeter - minferetdiam : minimum object's feret diameter - maxferetdiam : maximum object's feret diameter - meanferetdiam : average object's feret diameter - feretelongation : elongation index: object_maxferetdiam/object_minferetdiam - compactness : Isoperimetric quotient: the ration of the object's area to the area of a circle having the same perimeter - intercept0, intercept45 , intercept90, intercept135 : the number of times that a transition from background to foreground occurs a the angle 0ø, 45ø, 90ø and 135ø for the entire object - convexhullarea : area of the convex hull of the object - convexhullfillratio : ratio object_area/convexhullarea - convexperimeter : perimeter of the convex hull of the object - n_number_of_runs : number of horizontal strings of consecutive foreground pixels in the object - n_chained_pixels : number of chained pixels in the object - n_convex_hull_points : number of summits of the object's convex hull polygon - n_number_of_holes : number of holes (as closed white pixel area) in the object - roughness : measure of small scale variations of amplitude in the object's grey levels - rectangularity : ratio of the object's area over its best bounding rectangle's area - skewness : skewness of the object's grey level distribution - kurtosis : kurtosis of the object's grey level distribution - fractal_box : fractal dimension of the object's perimeter - hist25, hist50, hist75 : grey level value at quantile 0.25, 0.5 and 0.75 of the object's grey levels normalized cumulative histogram - valhist25, valhist50, valhist75 : sum of grey levels at quantile 0.25, 0.5 and 0.75 of the object's grey levels normalized cumulative histogram - nobj25, nobj50, nobj75 : number of objects after thresholding at the object_valhist25, object_valhist50 and object_valhist75 grey level - symetrieh :index of horizontal symmetry - symetriev : index of vertical symmetry - skelarea : area of the object skeleton - thick_r : maximum object's thickness/mean object's thickness - cdist : distance between the mass and the grey level object's centroids features_skimage.csv.gz Table of morphological features recomputed with skimage.measure.regionprops on the ROIs produced by ZooCAM. See http://scikit-image.org/docs/dev/api/skimage.measure.html#skimage.measure.regionprops for documentation. inventory.tsv Tree view of the taxonomy and number of images in each taxon, displayed as text. With columns : - lineage_level1 : taxonomic lineage corresponding to the level 1 classification - taxon_level1 : name of the taxon corresponding to the level 1 classification - n : number of objects in each taxon group map.png Map of the sampling locations, to give an idea of the diversity sampled in this dataset. imgs Directory containing images of each object, named according to the object id objid and sorted in subdirectories according to their taxon.

The BioSWOT-Med campaign (Doglioli et al., 2023) was conducted aboard R/V L’Atalante from April 20 to May 15, 2023 in the Northwestern Mediterranean Sea, in the region of the North Balearic Front (NBF) to study interactions between fine-scale oceanic circulation and biogeochemical processes.  Three water masses were sampled across the NBF, northern ('A'), southern ('B'), and frontal ('F'). Each Lagrangian station consisted of a 24-hour sampling period following the displacement of a water parcel (Doglioli et al., 2024). Vertical profiles down to 500 m were collected every 6 hours at 06:00 ('T1'), 12:00 ('T2'), 18:00 ('T3'), and 00:00 ('T4') UTC, for a total of 28 Lagrangian stations: first between April~24-28 (A1, F1, B1), and again between May~4-7 (B2, F2, A2), with a final station in southern waters (B3) on May~12-13. B2 and B3 stations were located inside an anticyclonic eddy. Hydrological profiles were obtained using a Sea-Bird CTD, with data averaged to a 1~m vertical resolution, they include potential temperature (°C), practical salinity, fluorescence-derived chlorophyll-a (µg/L) and oxygen (µmol/kg).  Samples for nitrate + nitrite and phosphate (µM) were collected from Niskin bottles and analyzed onboard within 2-12~hours using a segmented flow analyzer (AAIII HR Seal Analytical) following (Aminot et al., 2007). Quantification limits (QL) were 0.05 µM for nitrate and 0.02 µM for phosphate. Phosphate concentrations at a nanomolar level analyses were performed in the laboratory using a high-sensitivity method combining a 1 m Liquid Waveguide Capillary Cell (LWCC) and an auto-analyzer (Zhang et al. 2002), achieving a detection limit of 0.002µM.  A BGC-Argo float (WMO: 1902605 - Provor CTS4 SUNA) equipped with a CTD and SUNA nitrate sensor was deployed near station B2 and sampled the anticyclonic eddy. To better resolve the photic and nutricline layers, the standard sampling cycle was modified to a 6-hour frequency, reaching depths of 300-400~m. The BGC-Argo float nitrate dataset spans May~2-16 and includes 55~profiles, with a 0.5 µM limit of quantification. It passed through a nitrate calibration procedure against 8 ship-made  profiles at B2 and B3. Data export in NetCDF format - Dataset at the 7 Lagrangian stations (28 vertical profiles for each variable, 4 at each station):  ‘BioSWOT-Med_LS_Date_Time.nc’ (with day, time, longitude and latitude);  ‘BioSWOT-Med_LS_Nutrients.nc’ (with nitrate, phosphate and phosphate at nanomolar level concentrations and depths);  'BioSWOT-Med_LS_CTD.nc' (with temperature in situ, practical salinity, chlorophyll-a and oxygen concentrations, photosynthetically active radiations and depth). - Dataset of the BGC-Argo float including 55 vertical profiles recorded between May 2 and 16:  'BioSWOT-Med_BGC-Argo' (with day and time, longitude, latitude; nitrate concentrations with associated depth; temperature in situ and practical salinity associated depth; chlorophyll-a concentrations with associated predepthssure; and oxygen concentrations with associated depth). Contact list  Aude Joël (aude.joel@mio.osupytheas.fr), Sandra Nunige (sandra.nunige@mio.osupytheas.fr, for ship-made nutrient dataset), Riccardo Martellucci (rmartellucci@ogs.it, for the BGC-Argo float dataset) and Andrea Doglioli (andrea.doglioli@mio.osupytheas.fr, for the BioSWOT-Med cruise). References Aminot, A., & Kérouel, R. 2007. Dosage automatique des nutriments dans les eaux marines: méthodes en flux continu. Méthodes d’analyse en milieu marin. Ifremer. Doglioli, A.M., & Gregori, G. 2023. BioSWOT-Med cruise, RV L’Atalante. doi:10.17600/18002392. Doglioli, A., Grégori, G., D’Ovidio, F., Bosse, P. E., A., Carlotti, F., Lescot, M.,. . . Waggonet, E. (2024). Bioswot med. biological applicati.ons of the satellite surface water and ocean topography in the mediterranean. ref. rapport de campagne. université aix-marseille. (doi:10.13155/100060) Zhang, J.Z., & Chi, J. 2002. Automated analysis of nanomolar concentrations of phosphate in natural waters with liquid waveguide. Environ Sci Technol., 1;36(5), 1048–53. doi: 10.1021/es011094v.  

The DBCP – Data Buoy Cooperation Panel - is an international program coordinating the use of autonomous data buoys to observe atmospheric and oceanographic conditions, over ocean areas where few other measurements are taken. DBCP coordinates the global array of 1 600 active drifting buoys (August 2020) and historical observation from 14 000 drifting buoys. Data and metadata collected by drifting buoys are publically available in near real-time via the Global Data Assembly Centers (GDACs) in Coriolis-Ifremer (France) and MEDS (Canada) after an automated quality control (QC). In long term, scientifically quality controlled delayed mode data will be distributed on the GDACs. Disclaimer: the DB-GDAC is under construction. It is currently (January 2020) aggregating data from the Coriolis DAC (E-Surfmar, Canada). Additional DACs are considered. An interim provision from GTS real-time data to GDAC may be provided from Coriolis DAC.  

Within the ESA Coastal Blue Carbon project, the LIENSs laboratory contributed drone-derived products, SP80 ground survey points (with longitude, latitude, and plant data) and biomass measurements to test classification models for mapping salt marsh vegetation (e.g., Esnandes) and associated biomass/carbon stocks. Links to associated datasets are provided at the bottom of this sheet.

Based on the consolidation of the Ifremer networks RESCO (https://doi.org/10.17882/53007) and VELYGER (https://doi.org/10.17882/41888), the general objective of the ECOSCOPA project is to analyze the causes of spatio-temporal variability of the main life traits (Larval stage - Recruitment - Reproduction - Growth – Survival – Cytogenetic anomalies) of the Pacific oyster in France and follow their evolution over the long term in the context of climate change. The high frequency environmental data are monitored since 2010 at several stations next to oyster farm areas in eight bays of the French coast (from south to north): Thau Lagoon and bays of Arcachon, Marennes Oléron, Bourgneuf, Vilaine, Brest, Mont Saint-Michel and Veys (see map below). Sea temperature and practical salinity are recorded at 15-mins frequency. For several sites, fluorescence and turbidity data are also available. Data are acquired with automatic probes directly put in oyster bags or fixed on metallic structure at 50 cm over the sediment bottom, except for Thau Lagoon whose probes are deployed at 2m below sea surface. Since 2010, several types of probes were used: STP2, STPS, SMATCH or WiSens CTD from NKE (www.nke-instrumentation.fr) and recently ECO FLNTU (www.seabird.com). The probes are regularly qualified by calibrations in the Ifremer coastal laboratories. Precision estimated of the complete data collection process is: temperature (±0.1°C), salinity (±0.5psu), in vivo fluorescence (±10%), turbidity (±10%). The data are qualified into several levels: 0-No Quality Check performed, 1-Good data, 2-Probably good data, 3-Probably bad data, 4-Bad data, 5-Value changed, 7-Nominal value, 8-Interpolated value, 9-Missing value. 

Rocch, the french "mussel watch", provides regulatory data for shellfish area quality management. Once a year, molluscs (mainly mussels and oysters) were sampled at fixed periods (currently mid-February, with a tolerance of one tide before and after the target date) on 70 to 80  monitoring stations in areas used as bivalve molluscs production. For each monitoring station, molluscs are collected in wild beds or facilities, ensuring a minimum stay of 6 months on-site before sampling. The individuals selected are adults of a single species and uniform size (30 to 60 mm long for mussels, 2 to 3 years old for oysters, and commercial size for other species). A minimum of 50 mussels (and other species of similar size) or 10 oysters is required to constitute a representative pooled sample. Lead, mercury, cadmium, PAHs, PCBs, dioxins and, since 2023, regulated PFASs are analysed in molluscs tissues.

This dataset comprises two netcdf files. The first file contains the six global two-dimensional maps necessary to implement the tidal mixing parameterization presented in de Lavergne et al. (2020). Four power fields (E_wwi, E_sho, E_cri and E_hil) represent depth-integrated internal tide energy dissipation, with units of Watts per square meter. Each power field corresponds to a specific dissipative process and associated vertical structure of turbulence production. The two remaining fields, H_cri and H_bot, are decay heights (with units of meters) that enter the vertical structures of the E_cri and E_hil components, respectively. The second file contains three-dimensional fields of turbulence production (with units of Watts per kilogram) obtained by application of the parameterization to the WOCE global hydrographic climatology. The file includes the total turbulence production (epsilon_tid), its four components (epsilon_wwi, epsilon_sho, epsilon_cri, epsilon_hil), and the underlying hydrographic fields, as a function of longitude, latitude and depth. All maps have a horizontal resolution of 0.5º. Detailed documentation of the parameterization can be found in the following publication: de Lavergne, C., Vic, C., Madec, G., Roquet, F., Waterhouse, A.F., Whalen, C.B., Cuypers, Y., Bouruet-Aubertot, P., Ferron, B., Hibiya, T. A parameterization of local and remote tidal mixing. Journal of Advances in Modeling Earth Systems, 12, e2020MS002065 (2020). https://doi.org/10.1029/2020MS002065