2024
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'''Short description:''' Arctic L4 sea ice concentration product based on a L3 sea ice concentration product retrieved from Sentinel-1 and RCM SAR imagery and GCOM-W AMSR2 microwave radiometer data using a deep learning algorithm (SEAICE_ARC_PHY_AUTO_L3_MYNRT_011_023), gap-filled with OSI SAF EUMETSAT sea ice concentration products and delivered on a 1 km grid. '''DOI (product) :''' https://doi.org/10.48670/mds-00344
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EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity and contaminants. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on potential hazardous substances, despite the fact that some data might not be related to pollution (e.g. collected by deep corer). Temperature, salinity and additional parameters are included when available. It covers the Northeast Atlantic Ocean (40W). Data were harmonised and validated by the '‘IFREMER / IDM / SISMER - Scientific Information Systems for the SEA’ in France. The dataset contains water (profiles), sediment (profiles and timeseries) and biota (timeseries). The temporal coverage is 1974–2018 for water measurements, 1966–2020 for sediment measurements and 1979–2022 for biota measurements. Regional datasets concerning contaminants are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions ( https://doi.org/10.6092/8b52e8d7-dc92-4305-9337-7634a5cae3f4 ). Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/ . The harmonised dataset can be downloaded as as an ODV spreadsheet, which is composed of a metadata header followed by tab separated values. This spreadsheet can be imported into ODV Software for visualisation (more information can be found at: https://www.seadatanet.org/Software/ODV ). In addition, the same dataset is offered also as a txt file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms into subcomponents (substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications (e.g. LibreOffice Calc).
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This product displays for Nickel, positions with percentages of all available data values per group of animals that are present in EMODnet regional contaminants aggregated datasets, v2024. The product displays positions for all available years.
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This product displays for Tributyltin, positions with values counts that have been measured per matrix for each year and are present in EMODnet regional contaminants aggregated datasets, v2024. The product displays positions for every available year.
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Zostera marina (Linnaeus, 1753) is a flowering marine plant that occurs from temperate to subantarctic regions (Green and Short, 2003), forming meadows that are recognized as being among the most important ecosystems on the planet (Costanza et al., 1997; Duffy, 2006; Duarte et al., 2008; Dewsbury et al., 2016). Eelgrass is a foundation species, providing essential functions and services including coastal protection, erosion control, nutrient cycling, water purification, carbon sequestration, as well as food and habitat for a variety of species (Duarte 2002; Heck et al. 2003; Healey & Hovel 2004, Orth et al. 2006; Barbier et al., 2011; Fourqurean et al. 2012; Cullen-Unsworth & Unsworth 2013; Schmidt et al. 2011, 2016). Eelgrass can have a strong influence on the spatial distribution of associated fauna by altering the hydrodynamics of the marine environment (Fonseca and Fisher 1986), stabilizing sediments (Orth et al. 2006), providing abundant resources, available surface area, and increased ecological niches. Meadows also provide protection from predation by providing greater habitat complexity both above and below ground (Heck and Wetstone 1977; Orth et al. 1984; Gartner et al. 2013, Reynolds et al., 2018). Local patterns and regional differences in the taxonomic and functional diversity of assemblages associated with five Zostera marina meadows occurring over a distance of 800 km along the coast of France were investigated with the objective of determining which factors control community composition within this habitat. To this end, we examined - and -diversity of species- and trait-based descriptors, focused on polychaetes; bivalves and gastropods, three diverse groups exhibiting a wide range of ecological strategies (Jumars, Dorgan, & Lindsay, 2015) and having central roles in ecosystem functioning through activities such as bioturbation or trophic regime (Queirós et al., 2013, Duffy et al., 2015). Here we present the abundance (Table 1) and the functional trait database (Table 2) used for the benthic macrofauna found to live in association with eelgrass meadows in Chausey, Dinard, Sainte-Marguerite, Ile d’Yeu and Arcachon, sampled in the fall of 2019. Eight biological traits (divided into 32 modalities, Table S1) were selected, providing information linked to the ecological functions performed by the associated macrofauna. The selected traits provide information on: (i) resource use and availability (by the trophic group of species, e.g. Thrush et al. 2006); (ii) secondary production and the amount of energy and organic matter (OM) produced based on the life cycle of the organisms (including longevity, maximum size and mode of reproduction, e.g. (Cusson and Bourget, 2005; Thrush et al., 2006) and; (iii) the behavior of the species in general [i.e. how these species occupy the environment and contribute to biogeochemical fluxes through habitat, movement, and bioturbation activity, e.g. (Solan et al., 2004; Thrush et al., 2006; Queirós et al., 2013). Species were scored for each trait modality based on their affinity using a fuzzy coding approach (Chevenet et al., 1994), where multiple modalities can be attributed to a species if appropriate, and allowed for the incorporation of intraspecific variability in trait expression. Information for polychaetes was primarily extracted from Fauchald et al (1979), Jumars et al (2015), and Boyé et al (2019). Information for mollusks was obtained either from biological trait databases (www.marlin.ac.uk/biotic, www.univie.ac.at/arctictraits, Bacouillard et al 2020) or from publications (e.g. Queiros et al. 2013; Thrush et al, 2006; Caine, 1977). Information was collected at the lowest possible taxonomic level and when missing was based on data available in other species of the genus, or in some cases, in the same family (only for traits with low variability for these families). Figure 1. Map indicating the locations of the 5 study sites of Zostera marina meadows in France: three in the the English Channel, and two in the Bay of Biscay (all sites were sampled in 6 different stations).
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'''Short description:''' For the Mediterranean Sea - The product contains daily Level-3 sea surface wind with a 1km horizontal pixel spacing using Near Real-Time Synthetic Aperture Radar (SAR) observations and their collocated European Centre for Medium-Range Weather Forecasts (ECMWF) model outputs. Products are updated several times daily to provide the best product timeliness. '''DOI (product) :''' https://doi.org/10.48670/mds-00334
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This product displays for Nickel, median values since 2012 that have been measured per matrix and are present in EMODnet regional contaminants aggregated datasets, v2024. The median values ranges are derived from the following percentiles: 0-25%, 25-75%, 75-90%, >90%. Only "good data" are used, namely data with Quality Flag=1, 2, 6, Q (SeaDataNet Quality Flag schema). For water, only surface values are used (0-15 m), for sediment and biota data at all depths are used.
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The aim of this work was to document the seasonal and inter-annual dynamic of dissolved oxygen and ancillary data (T, S, Chl-a, turbidity, pH) along a cross-shelf transect off the Gironde estuary. This work has been motivated by recent simulations that suggest the occurrence of seasonal bottom deoxygenations in this River-dominated Ocean Margin (Riomar); but unfortunately there were no data sets to test this hypothesis until now. Profiles of temperature, salinity and dissolved oxygen were performed in the water column of the West Gironde Mud Patch off the Gironde estuary (from 45°46.383’N – 1°28.925’W to 45°35.524’N - 1°50.689’W) during seven cruises on the R/V Côte de la Manche (doi: 10.18142/284 ; 10.17600/18000861) between 2016 and 2021 (October 2016, August 2017, January 2018, April 2018, July 2019, April 2021, October 2021). Turbidity was measured in January and April 2018, July 2019 and October 2021, Chl-a in October 2016, August 2017, January 2018, April 2018 and July 2019 and pH in October 2021. This dataset had permitted to validate the occurrence of bottom deoxygenations when the water column is stratified.
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Early-life stages play a key role in the spatio-temporal dynamics of marine populations due to their highly dispersive properties, their sensitivities to environmental factors and their influences on juveniles’ replenishment. However, these stages are difficult to monitor, so that in-situ observations are scarce and disparate, preventing a good understanding of the control they exert on population dynamics. The Mediterranean coastlines have been highly surveyed during the last decades in different sub-regions; yet no effort was made to assemble observations originating from different research projects and countries. Moreover, this sea has been exploited for centuries and is now recognized as a climate-change hotspot, so that it represents an ideal laboratory to address the role of anthropogenic pressures on marine populations. To advance our knowledge, we build an exhaustive compilation of historical data collected over the past decades up to present. From spawning to settlement, it evaluates both egg and larval stages of coastal fishes characterized by bipartite life cycles. This compilation gathers 44 datasets from North-Western Mediterranean countries (including coastlines of Spain, France, Italy, Croatia and Montenegro) over the last three decades (1993-2021) originating from 48 data providers. We consider direct and indirect observations of early-life stages such as otoliths’ data, datasets of settlers and juveniles sampled by underwater visual census, shore seine, hand-nets or light-traps, as well as fish eggs and larvae sampled with plankton nets. All those types of data are harmonized into a uniform dataset that informs on the periods and locations of spawning and settlement. While some sampling techniques directly provide the variables of interests, other methods require a-posteriori estimations based on growth models from the Dynamic Energy Budget (DEB) theory, using taxon-dependent parameters available in the online Add-my-Pet database. Finally, the complete database consists in several taxon, each of them being associated with dates of both spawning and settlement, as well as other information such as the pelagic larval duration, measures of uncertainties and sampling characteristics (location, depth, etc). Statistical analyses of the consolidated database describe the overall coverage of sampling and evaluate the sampling gaps over space and time in order to guide future sampling efforts. In fact, sampling mainly occurs around marine reserves and from May to October. The general coverage of spawning and settlement is then assessed, looking at the differences between observed data (same distribution as sampling) and back-calculated data (nearly uniformly distributed over the year). Moreover, the overall taxa distribution is described, mainly represented by Sparidae. Thus, this database informs early-life traits and their variability for different coastal fish taxa in the North-Western Mediterranean in order to document their evolution in a changing world. Indeed, this database will be publicly available to help undertake future connectivity and climatic studies.
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This product displays positions symbolized per matrix, for all available contaminants measurements present in EMODnet regional contaminants aggregated datasets, v2024. The product displays positions for all available years.
Catalogue PIGMA