biota
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Classification of the Atlantic Ocean seabed into broad-scale benthic habitats employing a hierarchical top-down clustering approach aimed at informing Marine Spatial Planning. This work was performed at the University of Plymouth in 2021 with data provided by a wide group of partners representing the nations surrounding the Atlantic Ocean. It classifies continuous environmental data into discrete classes that can be compared to observed biogeographical patterns at various scales. It has 3 levels of classification. For ease of use, a layer is provided for each level. Level 1 has 4 classes. Level 2 has 15 classes nested within level 1. Layers indices are 2 digits (1[level1 class index]1[level 2 class index]). Level 3 has 157 classes nested within level 2 and class names have 4 digits (1digit[level1 class index]1[level 2 class index]2[level 3 class index]). Note that the classification was performed for the whole world and thus it has more classes than in the presented layer.
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Species distribution models (Random Forest) predicting the distribution of mixed cold-water coral community (Coral Garden) assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
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Maps of potential biomass catches (tons/year) per surface unit (0.25º latitude x 0.25º longitude) based on 3-D probability of occurrence for the main commercial fish species of the Atlantic. To map potential catches, first, mean catches (tons/year) were calculated according to Watson (2020) Global fisheries landings (V4) database for period 2010-2015 and then the total mean catch value for each species was redistributed according to the occurrence probability value that was modelled in 3-D using Shape-Constrained Generalized Additive Models (SC-GAMs). Potential catch value of each cell integrates the catches along the water column (from surface until 1000 m depth). See Valle et al. (2024) in Ecological Modelling 490:110632 ( https://doi.org/10.1016/j.ecolmodel.2024.110632 ), for more details.
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Species distribution models (GAM, Maxent and Random Forest ensemble) predicting the distribution of Solitary Scleractinian fields assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the north-east Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
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This metadata corresponds to the EUNIS Littoral biogenic habitat types (salt marshes), distribution based on vegetation plot data dataset. Littoral biogenic habitats (commonly known as salt marshes) are formed by animals such as worms and mussels or plants. The verified saltmarsh habitat samples used are derived from the Braun-Blanquet database (http://www.sci.muni.cz/botany/vegsci/braun_blanquet.php?lang=en) which is a centralised database of vegetation plots and comprises copies of national and regional databases using a unified taxonomic reference database. The geographic extent of the distribution data are all European countries except Armenia and Azerbaijan. The dataset is provided both in Geodatabase and Geopackage formats.
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Species distribution models (GAM, Maxent and Random Forest ensemble) predicting the distribution of discrete Lophelia pertusa - Desmophylum pertusum colonies assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image samples. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
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Modelled density of the seapen Kophobelemnon stelliferum in the North East Atlantic. The Random Forest density model trained on data collected by an ROV was constrained by an ensemble of Maxent and Random Forest presence-absence model trained on a larger dataset also collected by an ROV. This species provides structural complexity in an environment where it is lacking and, thus, promotes higher biodiversity where they settle. They are vulnerable to mechanical disturbance of the sediment by fishing gear and a better understanding of their distribution will lead to better management of their population. This work was performed at the University of Plymouth in 2021.
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3-D habitat suitability maps (HSM) or probability of occurrence maps, built using Shape-Constrained Generalized Additive Models (SC-GAMs) for the 30 main commercial species of the Atlantic region. Predictor variables for each species were selected from: sea water temperature, salinity, nitrate, net primary productivity, distance to seafloor, distance to coast, and relative position to mixed layer depth. Each species HSM contains 47 maps, one per depth level from 0 to 1000 m. Probability values of each map range from 0 (unsuitable habitat) to 1 (optimal habitat). For depth levels below the 0.99 quantile of the depth values found on the species occurrence data, NA values were assigned. Maps have been masked to species native range regions. See Valle et al. (2024) in Ecological Modelling 490:110632 (https://doi.org/10.1016/j.ecolmodel.2024.110632 ), for more details.
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Species distribution models (GAM, Maxent and Random Forest ensemble) predicting the distribution of Syringammina fragilissima fields assemblage in the North East Atlantic. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
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Species distribution models (GAM, Maxent and Random Forest ensemble) predicting the distribution of Solenosmilia variabilis reef assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
Catalogue PIGMA