biota
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The dataset includes age- and length-based catch per unit effort data for commercial fish species collected by the French trawl survey EVHOE.
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3-D habitat suitability maps (HSM) or probability of occurrence maps, built using Shape-Constrained Generalized Additive Models (SC-GAMs) for the 30 main commercial species of the Atlantic region. Predictor variables for each species were selected from: sea water temperature, salinity, nitrate, net primary productivity, distance to seafloor, distance to coast, and relative position to mixed layer depth. Each species HSM contains 47 maps, one per depth level from 0 to 1000 m. Probability values of each map range from 0 (unsuitable habitat) to 1 (optimal habitat). For depth levels below the 0.99 quantile of the depth values found on the species occurrence data, NA values were assigned. Maps have been masked to species native range regions. See Valle et al. (2024) in Ecological Modelling 490:110632 (https://doi.org/10.1016/j.ecolmodel.2024.110632 ), for more details.
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Species distribution models (Random Forest) predicting the distribution of mixed cold-water coral community (Coral Garden) assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
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Maps of potential biomass catches (tons/year) per surface unit (0.25º latitude x 0.25º longitude) based on 3-D probability of occurrence for the main commercial fish species of the Atlantic. To map potential catches, first, mean catches (tons/year) were calculated according to Watson (2020) Global fisheries landings (V4) database for period 2010-2015 and then the total mean catch value for each species was redistributed according to the occurrence probability value that was modelled in 3-D using Shape-Constrained Generalized Additive Models (SC-GAMs). Potential catch value of each cell integrates the catches along the water column (from surface until 1000 m depth). See Valle et al. (2024) in Ecological Modelling 490:110632 ( https://doi.org/10.1016/j.ecolmodel.2024.110632 ), for more details.
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ICES database of trawl surveys
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Species distribution models (GAM, Maxent and Random Forest ensemble) predicting the distribution of Syringammina fragilissima fields assemblage in the North East Atlantic. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
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Species distribution models (GAM, Maxent and Random Forest ensemble) predicting the distribution of Solitary Scleractinian fields assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the north-east Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
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This metadata corresponds to the EUNIS Coastal habitat types, predicted distribution of habitat suitability dataset. Coastal habitats are those above spring high tide limit (or above mean water level in non-tidal waters) occupying coastal features and characterised by their proximity to the sea, including coastal dunes and wooded coastal dunes, beaches and cliffs. Includes free-draining supralittoral habitats adjacent to marine habitats which are normally only very rarely subject to any type of salt water, in as much as they may be inhabited predominantly by terrestrial species, strandlines characterised by terrestrial invertebrates and moist and wet coastal dune slacks and dune-slack pools. Supralittoral sands and wracks may be found also in marine habitats (M). Excludes supralittoral rock pools and habitats, the splash zone immediately above the the mean water line, as well the spray zone and zone subject to sporadic inundation with salt water in as much as it may be inhabited predominantly by marine species, which are included in marine (M). The modelled suitability for EUNIS coastal habitat types is an indication of where conditions are favourable for the habitat type based on sample plot data (Braun-Blanquet database) and the Maxent software package. The modelled suitability map may be used as a proxy for the geographical distribution of the habitat type. Note however that it is not representing the actual distribution of the habitat type. As predictors for the suitability modelling not only climate and soil parameters have been taken into account, but also so-called RS-EVB's, Remote Sensing-enabled Essential Biodiversity Variables, like land use, vegetation height, phenology, and LAI (Leaf Area Index). Because the EBV's are restricted by the extent of the remote sensing data (EEA38 countries and the United Kingdom) the modelling result does also not go beyond this boundary. The dataset is provided both in Geodatabase and Geopackage formats.
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This metadata corresponds to the EUNIS Littoral biogenic habitat (salt marshes) types, predicted distribution of habitat suitability dataset. Littoral habitats are those formed by animals such as worms and mussels or plants (salt marshes). The verified littoral biogenic habitat samples used are derived from the Braun-Blanquet database (http://www.sci.muni.cz/botany/vegsci/braun_blanquet.php?lang=en) which is a centralised database of vegetation plots and comprises copies of national and regional databases using a unified taxonomic reference database. The geographic extent of the distribution data are all European countries except Armenia and Azerbaijan. The modelled suitability for EUNIS saltmarsh habitat types is an indication of where conditions are favourable for the habitat type based on sample plot data (Braun-Blanquet database) and the Maxent software package. The modelled suitability map may be used as a proxy for the geographical distribution of the habitat type. However, note that it is not representing the actual distribution of the habitat type. As predictors for the suitabilty modelling not only Climate and Soil parameters have been taken into account, but also so-called RS-EVB's, Remote Sensing-enabled Essential Biodiversity Variables like Landuse, Vegetation height, Phenology, LAI(Leave Area Index) and Population density. Because the EBV's are restricted by the extent of the Remote Sensing data (EEA38 countries and the United Kingdom) the modelling result does also not go beyond this boundary. The dataset is provided both in Geodatabase and Geopackage formats. The Training map files show the modelled suitable distribution, omitting the 10% of occurrence records in the least suitable environment under the assumption that they are not representative of the overall suitable habitat distribution. The 10 percentile training presence is an arbitrary threshold which omits all regions with habitat suitability lower than the suitability values for the lowest 10% of occurrence records.
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Species distribution models (GAM, Maxent and Random Forest ensemble) predicting the distribution of Acanella arbuscula assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
Catalogue PIGMA