Habitats and biotopes
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160 whole genomes sequences obtained from 160 individual fish samples representing about 100 different species present in Gulf of Lion, and bay of Biscay.
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This study aims to compare different metabarcoding sequences of commercially fished shrimps collected by tree counties on the North Brazil Shelf Large Marine Ecosystem
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The eleven collected wild strains of T. lutea were compared phenotypically, in particular with regard to their pigment and lipid profiles. The genome of each T. lutea strain was also sequenced to investigate the genetic structure and genome organisation of this species. Collected data were summarized in a genome browser to provide easy-to-use support for the scientific community (https://genomes-catalog.ifremer.fr). This provides an important resource- to understand, exploit and predict the biodiversity of this species.
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Successive infections with Vibrio harveyi were conducted in two populations of the European abalone in order to examine which genes may be involved in improved survival to the disease in the St. Malo population.
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Distribution of catch from deep-sea impacting fishing on the North Atlantic (18°N to 76°N and 36°E to 98°W), for the period 2010-2015. The average of yearly fishing catch for the period 2010-2015 is displayed as an index on the ATLAS grid of 25km * 25km resolution. Source data originated from the Global Fisheries Landings V4.0 database. The dataset was filtered to select only the fishing gears that have an impact on large areas of the seafloor (dredges, bottom trawls, and Danish seines). Within each cell, all remaining catch records were summed to get the total catch rate of the considered year. This dataset was built to feed a basin-wide spatial conservation planning exercise, targeting the deep sea of the North Atlantic. The goal of this approach was to identify conservation priority areas for Vulnerable Marine Ecosystems (VMEs) and deep fish species, based on the distribution of species and habitats, human activities and current spatial management.
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ddRAD genotyping was used to evaluate population connectivity and putative loci under selection in honeycomb worm from 13 sites spanning its distribution in the Atlantic and Mediterranean coasts.
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Whole genome pooled sequencing of individuals from 4 populations and 3 different color phenotype in order to uncover the genetic variants linked to color expression in the pearl oyster P. margaritifera.
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This dataset consists of metatranscriptomic sequencing reads corresponding to coastal micro-eukaryote communities sampled in Western Europe in 2018 and 2019.
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DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron
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2bRAD genotyping will be used to estimate genetic diversity and connectivity among populations of Sabellaria alveolata. We will relate population genetic parameters with reef state characteristics.
Catalogue PIGMA