'''Short description:''' Le modèle biogéochimique ECO-MARS3D sur la façade Manche Atlantique (PREVIMER_B1-ECOMARS3D-MANGA4000) est un modèle 3D de résolution spatiale 4km qui fournit les concentrations de nutriments et de plancton toutes les heures sur 30 niveaux (fenêtre de prévision à 4 jours). '''Paramètres calculés :''' Les paramètres calculés sont les suivants : * SAL : sea_water_salinity * TEMP : sea_water_temperature * suspended_inorganic_particulate_matter : mass_concentration_of_suspended_matter_in_sea_water * nanopicoplankton_nitrogen : mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_water * diatom_nitrogen : mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_water * dinoflagellate_nitrogen : mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_water * microzooplankton_nitrogen : mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_water * mesozooplankton_nitrogen : mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_water * colonial_phaeocystis_nitrogen : mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_water * phaeocystis_mucus : concentration_of_phaeocystis_mucus_expressed_as_mass_in_sea_water * ammonium : mole_concentration_of_ammonium_in_sea_water * nitrate : mole_concentration_of_nitrate_in_sea_water * dissolved_silicate : mole_concentration_of_silicate_in_sea_water * dissolved_phosphate : mole_concentration_of_phosphate_in_sea_water * dissolved_oxygen : dissolved_oxygen_in_water_column * cumulative_nanoflagellate_carbon_production : cumulative_nanoflagellate_production_expressed_as_carbon_in_sea_water * cumulative_diatom_carbon_production : cumulative_diatom_production_expressed_as_carbon_in_sea_water * cumulative_dinoflagellate_carbon_production : cumulative_dinoflagellate_production_expressed_as_carbon_in_sea_water * cumulative_phaeocystis_carbon_production : cumulative_phaeocystis_production_expressed_as_carbon_in_sea_water * organic_nitrogen_benth : mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthos Les paramètres diagnostiques calculés sont les suivants : * XE : sea_surface_height_above_geoid * maximum_de_diat : maximum_diatom_mass_concentration_in_sea_water * maximum_de_dino : maximum_dinoflagellate_mass_concentration_in_sea_water * maximum_de_nano : maximum_nanoflagellate_mass_concentration_in_sea_water * grad_vert_salinite : maximum_vertical_gradient_of_sea_water_salinity * grad_vert_temp : maximum_vertical_gradient_of_sea_water_temperature * extinction_lumineuse : light_extinction_in_sea_water * prod_diat : cumulated_production_of_diatoms_in_sea_water_column_expressed_in_carbon * prod_dino : cumulated_production_of_dinoflagellates_in_sea_water_column_expressed_in_carbon * prod_nano : cumulated_production_of_nanoflagellates_in_sea_water_column_expressed_in_carbon * chlorophylle_a : chlorophyll_mass_concentration_in_sea_water * prod_cumul_chloro : cumulated_total_production_in_sea_water_column_expressed_in_carbon * maximum_de_phaeocystis : maximum_phaeocystis_mass_concentration_in_sea_water * prod_phaeocystis : cumulated_production_of_phaeocystis_in_sea_water_column_expressed_in_carbon * oxygen_saturation : oxygen_saturation * ammoniumGIRON_tracer_sign: mole_concentration_of_ammonium_in_sea_waterGIRON_tracer_sign * ammoniumGIRON_tracer_age: mole_concentration_of_ammonium_in_sea_waterGIRON_tracer_age * nitrateGIRON_tracer_sign: mole_concentration_of_nitrate_in_sea_waterGIRON_tracer_sign * nitrateGIRON_tracer_age: mole_concentration_of_nitrate_in_sea_waterGIRON_tracer_age * nanopicoplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * nanopicoplankton_nitrogenGIRON_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * diatom_nitrogenGIRON_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * diatom_nitrogenGIRON_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * dinoflagellate_nitrogenGIRON_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * dinoflagellate_nitrogenGIRON_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * microzooplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * microzooplankton_nitrogenGIRON_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * mesozooplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * mesozooplankton_nitrogenGIRON_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * detrital_nitrogenGIRON_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * detrital_nitrogenGIRON_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * colonial_phaeocystis_nitrogenGIRON_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * colonial_phaeocystis_nitrogenGIRON_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * phaeocystis_cells_nitrogenGIRON_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * phaeocystis_cells_nitrogenGIRON_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * organic_nitrogen_benthGIRON_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosGIRON_tracer_sign * organic_nitrogen_benthGIRON_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosGIRON_tracer_age * phytoplankton_sign_N_GIRON: nitrogen_fraction_in_phytoplankton_from_source_GIRON * phytoplankton_age_N_GIRON: age_of_nitrogen_fraction_in_phytoplankton_from_source_GIRON * ammoniumLOIRE_tracer_sign: mole_concentration_of_ammonium_in_sea_waterLOIRE_tracer_sign * ammoniumLOIRE_tracer_age: mole_concentration_of_ammonium_in_sea_waterLOIRE_tracer_age * nitrateLOIRE_tracer_sign: mole_concentration_of_nitrate_in_sea_waterLOIRE_tracer_sign * nitrateLOIRE_tracer_age: mole_concentration_of_nitrate_in_sea_waterLOIRE_tracer_age * nanopicoplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * nanopicoplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * diatom_nitrogenLOIRE_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * diatom_nitrogenLOIRE_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * dinoflagellate_nitrogenLOIRE_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * dinoflagellate_nitrogenLOIRE_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * microzooplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * microzooplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * mesozooplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * mesozooplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * detrital_nitrogenLOIRE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * detrital_nitrogenLOIRE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * colonial_phaeocystis_nitrogenLOIRE_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * colonial_phaeocystis_nitrogenLOIRE_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * phaeocystis_cells_nitrogenLOIRE_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * phaeocystis_cells_nitrogenLOIRE_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * organic_nitrogen_benthLOIRE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosLOIRE_tracer_sign * organic_nitrogen_benthLOIRE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosLOIRE_tracer_age * phytoplankton_sign_N_LOIRE: nitrogen_fraction_in_phytoplankton_from_source_LOIRE * phytoplankton_age_N_LOIRE: age_of_nitrogen_fraction_in_phytoplankton_from_source_LOIRE * ammoniumSEINE_tracer_sign: mole_concentration_of_ammonium_in_sea_waterSEINE_tracer_sign * ammoniumSEINE_tracer_age: mole_concentration_of_ammonium_in_sea_waterSEINE_tracer_age * nitrateSEINE_tracer_sign: mole_concentration_of_nitrate_in_sea_waterSEINE_tracer_sign * nitrateSEINE_tracer_age: mole_concentration_of_nitrate_in_sea_waterSEINE_tracer_age * nanopicoplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * nanopicoplankton_nitrogenSEINE_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * diatom_nitrogenSEINE_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * diatom_nitrogenSEINE_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * dinoflagellate_nitrogenSEINE_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * dinoflagellate_nitrogenSEINE_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * microzooplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * microzooplankton_nitrogenSEINE_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * mesozooplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * mesozooplankton_nitrogenSEINE_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * detrital_nitrogenSEINE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * detrital_nitrogenSEINE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * colonial_phaeocystis_nitrogenSEINE_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * colonial_phaeocystis_nitrogenSEINE_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * phaeocystis_cells_nitrogenSEINE_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * phaeocystis_cells_nitrogenSEINE_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * organic_nitrogen_benthSEINE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosSEINE_tracer_sign * organic_nitrogen_benthSEINE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosSEINE_tracer_age * phytoplankton_sign_N_SEINE: nitrogen_fraction_in_phytoplankton_from_source_SEINE * phytoplankton_age_N_SEINE: age_of_nitrogen_fraction_in_phytoplankton_from_source_SEINE

160 whole genomes sequences obtained from 160 individual fish samples representing about 100 different species present in Gulf of Lion, and bay of Biscay.

Proposed regional conservation areas in the Mediterranean

In order to better characterize the population structure of common dolphins (Delphinus delphis) in the Bay of Biscay, a single digest RADseq (SbfI enzyme) protocol was used to obtain paired-end, 150bp NGS sequences on the Illumina NovaSeq 6000 sequencing platform. D. delphis samples from the Western North Atlantic, and samples from three other delphinid species were included as outgroups.

In integrated multi-trophic aquaculture (IMTA), multiple aquatic species from different trophic levels are farmed together. Thus, waste from one species can be used as input (fertiliser and food) for another species. The EU-funded ASTRAL project will develop IMTA production chains for the Atlantic markets. Focusing on a regional challenge-based perspective, it will bring together labs in Ireland and Scotland (open offshore labs), South Africa (flow-through inshore) and Brazil (recirculation inshore) as well as Argentina (prospective IMTA lab). The aim is to increase circularity by as much as 60 % compared to monoculture baseline aquaculture and to boost revenue diversification for aquaculture producers. ASTRAL will share, integrate, and co-generate knowledge, technology and best practices fostering a collaborative ecosystem along the Atlantic.

The present data set concerne metabarcoding raw reads produced using 4 different PCR targeting polymerase or capside coding region of the genoyupe I and II of norovirus. Test samples of norovirus with serial dilutions in pure water and after a bio-accumulation in oysters. Sequencing was made after VirCapSeq-VERT approach.

This L3U (Level 3 Uncollated) dataset contains global daily Sea Surface Temperature (SST) on a 0.02 degree grid resolution. It is produced by the National Oceanic and Atmospheric Administration (NOAA) Advanced Clear Sky Processor for Ocean (ACSPO) using L2P (Level 2 Preprocessed) product acquired from the Meteorological Operational satellite A (Metop-A) Advanced Very High Resolution Radiometer 3 (AVHRR/3) (https://podaac.jpl.nasa.gov/dataset/AVHRRF_MA-STAR-L2P-v2.80 ) in Full Resolution Area Coverage (FRAC) mode as input. It is distributed as 10-minute granules in netCDF-4 format, compliant with the Group for High Resolution Sea Surface Temperature (GHRSST) Data Specification version 2 (GDS2). There are 144 granules per 24-hour interval. Fill values are reported in all invalid pixels, including land pixels with >5 km inland. For each valid water pixel (defined as ocean, sea, lake or river), and up to 5 km inland, the following major layers are reported: SSTs and ACSPO clear-sky mask (ACSM; provided in each grid as part of l2p_flags, which also includes day/night, land, ice, twilight, and glint flags). Only input L2P SSTs with QL=5 were gridded, so all valid SSTs are recommended for the users. Per GDS2 specifications, two additional Sensor-Specific Error Statistics layers (SSES bias and standard deviation) are reported in each pixel with valid SST. Ancillary layers include wind speed and ACSPO minus reference Canadian Meteorological Centre (CMC) Level 4 (L4) SST. The ACSPO Metop-A AVHRR FRAC L3U product is monitored and validated against iQuam in situ data https://www.star.nesdis.noaa.gov/socd/sst/iquam , in the NOAA SST Quality Monitor (SQUAM) system https://www.star.nesdis.noaa.gov/socd/sst/squam . SST imagery and clear-sky mask are evaluated, and checked for consistency with L2P and other satellites/sensors SST products, in the NOAA ACSPO Regional Monitor for SST (ARMS) system https://www.star.nesdis.noaa.gov/socd/sst/arms . More information about the dataset is found at AVHRRF_MA-STAR-L2P-v2.80 and in (Pryamitsyn et al., 2021).